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Protein

Gas vesicle structural protein 1

Gene

gvpA11

more
Organism
Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) (Halobacterium halobium)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.

Miscellaneous

The chromosomal gene is expressed during the stationary phase of growth, while the plasmid encoded gene is transcribed constitutively throughout the growth cycle.

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Recommended name:
Gas vesicle structural protein 1
Short name:
GVP
Alternative name(s):
P-VAC
Gene namesi
Name:gvpA11
Synonyms:gvpA
Ordered Locus Names:VNG_5030G
AND
Name:gvpA12
Ordered Locus Names:VNG_6029G
Encoded oniPlasmid pNRC1004 Publications
Plasmid pNRC2001 Publication
Plasmid pHH13 Publications
OrganismiHalobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) (Halobacterium halobium)
Taxonomic identifieri64091 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaStenosarchaea groupHalobacteriaHalobacterialesHalobacteriaceaeHalobacterium
Proteomesi
  • UP000000554 Componentsi: Plasmid pNRC100, Plasmid pNRC200

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Gas vesicle, Membrane, Vacuole

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001999932 – 76Gas vesicle structural protein 1Add BLAST75

Family & Domainsi

Sequence similaritiesi

Belongs to the gas vesicle protein type A family.Curated

Phylogenomic databases

InParanoidiP08958
OMAiQPNERNA
OrthoDBiPOG093Z0L48
PhylomeDBiP08958

Family and domain databases

HAMAPiMF_00576 Gas_vesicle_A, 1 hit
InterProiView protein in InterPro
IPR000638 Gas-vesicle_GvpA
IPR018493 Gas-vesicle_GvpA_CS
PfamiView protein in Pfam
PF00741 Gas_vesicle, 1 hit
PROSITEiView protein in PROSITE
PS00234 GAS_VESICLE_A_1, 1 hit
PS00669 GAS_VESICLE_A_2, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P08958-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAQPDSSGLA EVLDRVLDKG VVVDVWARVS LVGIEILTVE ARVVAASVDT
60 70
FLHYAEEIAK IEQAELTAGA EAAPEA
Length:76
Mass (Da):8,005
Last modified:January 23, 2007 - v3
Checksum:i7481C47A9FDC5939
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti71 – 75EAAPE → RRHPRPDAQASLRP (PubMed:3448465).Curated5

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y00534 Genomic DNA Translation: CAA68593.1
X12863 Genomic DNA Translation: CAA31340.1
X15374 Genomic DNA Translation: CAA33434.1
M58557 Genomic DNA Translation: AAA98196.1
X57161 Genomic DNA Translation: CAA40450.1
X64729 Genomic DNA Translation: CAA45980.1
AF016485 Genomic DNA Translation: AAC82809.1
AE004438 Genomic DNA Translation: AAG20726.1
PIRiB27740
S01423
S07323
T08242
RefSeqiWP_010890519.1, NC_002608.1

Genome annotation databases

EnsemblBacteriaiAAC82809; AAC82809; AAC82809
AAG20726; AAG20726; VNG_6029G
GeneIDi5954491
KEGGihal:gvpA
hal:VNG_6029G
PATRICifig|64091.14.peg.2099

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y00534 Genomic DNA Translation: CAA68593.1
X12863 Genomic DNA Translation: CAA31340.1
X15374 Genomic DNA Translation: CAA33434.1
M58557 Genomic DNA Translation: AAA98196.1
X57161 Genomic DNA Translation: CAA40450.1
X64729 Genomic DNA Translation: CAA45980.1
AF016485 Genomic DNA Translation: AAC82809.1
AE004438 Genomic DNA Translation: AAG20726.1
PIRiB27740
S01423
S07323
T08242
RefSeqiWP_010890519.1, NC_002608.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC82809; AAC82809; AAC82809
AAG20726; AAG20726; VNG_6029G
GeneIDi5954491
KEGGihal:gvpA
hal:VNG_6029G
PATRICifig|64091.14.peg.2099

Phylogenomic databases

InParanoidiP08958
OMAiQPNERNA
OrthoDBiPOG093Z0L48
PhylomeDBiP08958

Family and domain databases

HAMAPiMF_00576 Gas_vesicle_A, 1 hit
InterProiView protein in InterPro
IPR000638 Gas-vesicle_GvpA
IPR018493 Gas-vesicle_GvpA_CS
PfamiView protein in Pfam
PF00741 Gas_vesicle, 1 hit
PROSITEiView protein in PROSITE
PS00234 GAS_VESICLE_A_1, 1 hit
PS00669 GAS_VESICLE_A_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiGVPA1_HALSA
AccessioniPrimary (citable) accession number: P08958
Secondary accession number(s): P07831, Q9HI18
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 1, 1988
Last sequence update: January 23, 2007
Last modified: October 10, 2018
This is version 116 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Plasmid, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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Main funding by: National Institutes of Health

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