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Protein

Pathogenesis-related protein 1A

Gene
N/A
Organism
Nicotiana tabacum (Common tobacco)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Probably involved in the defense reaction of plants against pathogens.

GO - Biological processi

Keywordsi

Molecular functionPathogenesis-related protein
Biological processPlant defense

Names & Taxonomyi

Protein namesi
Recommended name:
Pathogenesis-related protein 1A
Short name:
PR-1A
OrganismiNicotiana tabacum (Common tobacco)
Taxonomic identifieri4097 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsSolanalesSolanaceaeNicotianoideaeNicotianeaeNicotiana
Proteomesi
  • UP000084051 Componenti: Genome assembly

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Vacuole

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 301 PublicationAdd BLAST30
ChainiPRO_000000630031 – 168Pathogenesis-related protein 1AAdd BLAST138

Post-translational modificationi

Three disulfide bonds are present.By similarity

Keywords - PTMi

Disulfide bond

Expressioni

Inductioni

Synthesized during pathogen infection or other stress-related responses.

Structurei

3D structure databases

ProteinModelPortaliP08299
SMRiP08299
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini38 – 156SCPAdd BLAST119

Sequence similaritiesi

Belongs to the CRISP family.Curated

Keywords - Domaini

Signal

Family and domain databases

CDDicd05381 SCP_PR-1_like, 1 hit
Gene3Di3.40.33.10, 1 hit
InterProiView protein in InterPro
IPR001283 Allrgn_V5/Tpx1
IPR018244 Allrgn_V5/Tpx1_CS
IPR014044 CAP_domain
IPR035940 CAP_sf
IPR034111 SCP_PR1-like
IPR002413 V5_allergen
PANTHERiPTHR10334 PTHR10334, 1 hit
PfamiView protein in Pfam
PF00188 CAP, 1 hit
PRINTSiPR00838 V5ALLERGEN
PR00837 V5TPXLIKE
SMARTiView protein in SMART
SM00198 SCP, 1 hit
SUPFAMiSSF55797 SSF55797, 1 hit
PROSITEiView protein in PROSITE
PS01009 CRISP_1, 1 hit
PS01010 CRISP_2, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P08299-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGFVLFSQLP SFLLVSTLLL FLVISHSCRA QNSQQDYLDA HNTARADVGV
60 70 80 90 100
EPLTWDDQVA AYAQNYASQL AADCNLVHSH GQYGENLAEG SGDFMTAAKA
110 120 130 140 150
VEMWVDEKQY YDHDSNTCAQ GQVCGHYTQV VWRNSVRVGC ARVQCNNGGY
160
VVSCNYDPPG NYRGESPY
Length:168
Mass (Da):18,574
Last modified:August 1, 1988 - v1
Checksum:i27375217031292E0
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti5 – 6LF → VS in CAA31008 (PubMed:3186451).Curated2
Sequence conflicti57D → S AA sequence (PubMed:16453639).Curated1
Sequence conflicti68 – 69SQ → PS AA sequence (PubMed:16453639).Curated2
Sequence conflicti106D → N in CAA30017 (Ref. 3) Curated1
Sequence conflicti153S → T in CAA30017 (Ref. 3) Curated1
Sequence conflicti162Y → W AA sequence (PubMed:16453639).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X05959 Genomic DNA Translation: CAA29392.1
X06361 Genomic DNA Translation: CAA29660.1
X12485 mRNA Translation: CAA31008.1
X06930 Genomic DNA Translation: CAA30017.1
PIRiA05264
A24620

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X05959 Genomic DNA Translation: CAA29392.1
X06361 Genomic DNA Translation: CAA29660.1
X12485 mRNA Translation: CAA31008.1
X06930 Genomic DNA Translation: CAA30017.1
PIRiA05264
A24620

3D structure databases

ProteinModelPortaliP08299
SMRiP08299
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

CDDicd05381 SCP_PR-1_like, 1 hit
Gene3Di3.40.33.10, 1 hit
InterProiView protein in InterPro
IPR001283 Allrgn_V5/Tpx1
IPR018244 Allrgn_V5/Tpx1_CS
IPR014044 CAP_domain
IPR035940 CAP_sf
IPR034111 SCP_PR1-like
IPR002413 V5_allergen
PANTHERiPTHR10334 PTHR10334, 1 hit
PfamiView protein in Pfam
PF00188 CAP, 1 hit
PRINTSiPR00838 V5ALLERGEN
PR00837 V5TPXLIKE
SMARTiView protein in SMART
SM00198 SCP, 1 hit
SUPFAMiSSF55797 SSF55797, 1 hit
PROSITEiView protein in PROSITE
PS01009 CRISP_1, 1 hit
PS01010 CRISP_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiPR1A_TOBAC
AccessioniPrimary (citable) accession number: P08299
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 1, 1988
Last sequence update: August 1, 1988
Last modified: February 28, 2018
This is version 92 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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Main funding by: National Institutes of Health

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