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Protein

Protein virC2

Gene

virC2

Organism
Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58))
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Miscellaneous

The Ti plasmid contains at least six transcriptional units, designated vir loci, which are essential for efficient crown-gall tumorigenesis.

GO - Molecular functioni

  • DNA binding Source: PAMGO_GAT

GO - Biological processi

Enzyme and pathway databases

BioCyciAGRO:ATU6179-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Protein virC2
Gene namesi
Name:virC2
Ordered Locus Names:Atu6179
ORF Names:AGR_pTi_16
Encoded oniPlasmid pTiC580 Publication
OrganismiAgrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58))
Taxonomic identifieri176299 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacteriumAgrobacterium tumefaciens complex
Proteomesi
  • UP000000813 Componenti: Plasmid Ti

Pathology & Biotechi

Keywords - Diseasei

Crown gall tumor

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000658531 – 202Protein virC2Add BLAST202

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
virC1P071653EBI-7412655,EBI-7412683

Protein-protein interaction databases

IntActiP07166, 2 interactors
MINTiP07166

Structurei

Secondary structure

1202
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi83 – 88Combined sources6
Helixi97 – 102Combined sources6
Turni103 – 105Combined sources3
Helixi108 – 128Combined sources21
Helixi131 – 134Combined sources4
Beta strandi152 – 157Combined sources6
Helixi160 – 170Combined sources11
Helixi178 – 199Combined sources22

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2RH3X-ray1.70A82-202[»]
ProteinModelPortaliP07166
SMRiP07166
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP07166

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000091438
OMAiFGHKLAT

Family and domain databases

Gene3Di3.30.70.1760, 1 hit
InterProiView protein in InterPro
IPR010985 Ribbon_hlx_hlx
IPR009841 VirC2
IPR038473 VirC2_C_sf
PfamiView protein in Pfam
PF07181 VirC2, 1 hit
PIRSFiPIRSF016094 VirC2, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD022944 VirC2, 1 hit
SUPFAMiSSF47598 SSF47598, 1 hit

Sequencei

Sequence statusi: Complete.

P07166-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGIRKPALSV GEARRLAAAR PEIVHPSLPV ATQNSTLPQP PENLDEEDRR
60 70 80 90 100
PAPATAKRCH SSDQQSMLTV DALSSTTAPE KIQVFLSARP PAPEVSKIYD
110 120 130 140 150
NLILQYSPSK SLQMILRRAL GDFENMLADG SFRAAPKSYP IPHTAFEKSI
160 170 180 190 200
IVQTSRMFPV SLIEAARNHF DPLGLETARA FGHKLATAAL ACFFAREKAT

NS
Length:202
Mass (Da):22,075
Last modified:April 1, 1988 - v1
Checksum:i4DD8C5F96C81F28F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y00535 Genomic DNA Translation: CAA68596.1
M16397 Genomic DNA Translation: AAA98387.1
J03320 Genomic DNA No translation available.
AE007871 Genomic DNA Translation: AAK90941.2
PIRiAI3249
B25975
RefSeqiNP_396500.2, NC_003065.3
WP_010891491.1, NC_003065.3

Genome annotation databases

EnsemblBacteriaiAAK90941; AAK90941; Atu6179
GeneIDi1137502
KEGGiatu:Atu6179
PATRICifig|176299.10.peg.5373

Similar proteinsi

Entry informationi

Entry nameiVIRC2_AGRFC
AccessioniPrimary (citable) accession number: P07166
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 1, 1988
Last sequence update: April 1, 1988
Last modified: March 28, 2018
This is version 89 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Plasmid, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

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