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UniProtKB - P07117 (PUTP_ECOLI)

Entry version 174 (02 Jun 2021)
Sequence version 1 (01 Apr 1988)
Previous versions | rss
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Protein

Sodium/proline symporter

Gene

putP

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Catalyzes the sodium-dependent uptake of extracellular L-proline. This protein is also capable of using lithium as the transport cation. Also catalyzes the uptake of propionate.

1 Publication

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection describes interesting single amino acid sites on the sequence that are not defined in any other subsection. This subsection can be displayed in different sections ('Function', 'PTM / Processing', 'Pathology and Biotech') according to its content.<p><a href='/help/site' target='_top'>More...</a></p>Sitei344Involved in high-affinity binding for sodium and proline1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processAmino-acid transport, Ion transport, Sodium transport, Symport, Transport
LigandSodium

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		EcoCyc:PUTP-MONOMER
MetaCyc:PUTP-MONOMER

Protein family/group databases

Transport Classification Database

More...TCDBi		2.A.21.2.1, the solute:sodium symporter (sss) family

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Sodium/proline symporter
Alternative name(s):
Proline permease
Propionate transporter
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:putP
Ordered Locus Names:b1015, JW1001
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiEscherichia coli (strain K12)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri83333 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Escherichia ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000318 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the subcellular compartment where each non-membrane region of a membrane-spanning protein is found.<p><a href='/help/topo_dom' target='_top'>More...</a></p>Topological domaini1 – 3CytoplasmicSequence analysis3
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei4 – 26HelicalSequence analysisAdd BLAST23
Topological domaini27 – 66PeriplasmicSequence analysisAdd BLAST40
Transmembranei67 – 87HelicalSequence analysisAdd BLAST21
Topological domaini88 – 124CytoplasmicSequence analysisAdd BLAST37
Transmembranei125 – 150HelicalSequence analysisAdd BLAST26
Topological domaini151 – 162PeriplasmicSequence analysisAdd BLAST12
Transmembranei163 – 184HelicalSequence analysisAdd BLAST22
Topological domaini185 – 189CytoplasmicSequence analysis5
Transmembranei190 – 213HelicalSequence analysisAdd BLAST24
Topological domaini214 – 231PeriplasmicSequence analysisAdd BLAST18
Transmembranei232 – 248HelicalSequence analysisAdd BLAST17
Topological domaini249 – 274CytoplasmicSequence analysisAdd BLAST26
Transmembranei275 – 295HelicalSequence analysisAdd BLAST21
Topological domaini296 – 319PeriplasmicSequence analysisAdd BLAST24
Transmembranei320 – 340HelicalSequence analysisAdd BLAST21
Topological domaini341 – 370CytoplasmicSequence analysisAdd BLAST30
Transmembranei371 – 391HelicalSequence analysisAdd BLAST21
Topological domaini392 – 397PeriplasmicSequence analysis6
Transmembranei398 – 423HelicalSequence analysisAdd BLAST26
Topological domaini424 – 430CytoplasmicSequence analysis7
Transmembranei431 – 445HelicalSequence analysisAdd BLAST15
Topological domaini446 – 448PeriplasmicSequence analysis3
Transmembranei449 – 475HelicalSequence analysisAdd BLAST27
Topological domaini476 – 502CytoplasmicSequence analysisAdd BLAST27

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Reduced growth rate when grown on propionate as sole carbon source.1 Publication

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/manual/pathology%5Fand%5Fbiotech%5Fsection">'Pathology and Biotech'</a> section describes the effect of the experimental mutation of one or more amino acid(s) on the biological properties of the protein.<p><a href='/help/mutagen' target='_top'>More...</a></p>Mutagenesisi257R → C: Sodium-independent binding affinity for proline. 1
Mutagenesisi376R → E or Q: No change in activity. 1 Publication1
Mutagenesisi376R → K: Loss of activity. 1 Publication1

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001053981 – 502Sodium/proline symporterAdd BLAST502

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		P07117

PRoteomics IDEntifications database

More...PRIDEi		P07117

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section reports the experimentally proven effects of inducers and repressors (usually chemical compounds or environmental factors) on the level of protein (or mRNA) expression (up-regulation, down-regulation, constitutive expression).<p><a href='/help/induction' target='_top'>More...</a></p>Inductioni

Up-regulated by propionate.1 Publication

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Has been isolated from inner membrane preparations as a homodimer.

1 Publication

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...BioGRIDi		4260051, 14 interactors
849976, 3 interactors

Protein interaction database and analysis system

More...IntActi		P07117, 4 interactors

STRING: functional protein association networks

More...STRINGi		511145.b1015

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni27 – 66HydrophilicAdd BLAST40
Regioni88 – 124HydrophilicAdd BLAST37
Regioni151 – 162HydrophilicAdd BLAST12
Regioni185 – 189Hydrophilic5
Regioni214 – 231HydrophilicAdd BLAST18
Regioni249 – 274HydrophilicAdd BLAST26
Regioni296 – 319HydrophilicAdd BLAST24
Regioni341 – 370HydrophilicAdd BLAST30
Regioni392 – 397Hydrophilic6
Regioni424 – 430Hydrophilic7
Regioni446 – 448Hydrophilic3
Regioni476 – 502HydrophilicAdd BLAST27

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. [View classification]Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		COG0591, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_018808_15_2_6

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		P07117

Database for complete collections of gene phylogenies

More...PhylomeDBi		P07117

Family and domain databases

Conserved Domains Database

More...CDDi		cd11475, SLC5sbd_PutP, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.20.1730.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR038377, Na/Glc_symporter_sf
IPR011851, Na/Pro_symporter
IPR001734, Na/solute_symporter
IPR018212, Na/solute_symporter_CS

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00474, SSF, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR02121, Na_Pro_sym, 1 hit
TIGR00813, sss, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS00456, NA_SOLUT_SYMP_1, 1 hit
PS00457, NA_SOLUT_SYMP_2, 1 hit
PS50283, NA_SOLUT_SYMP_3, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P07117-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAISTPMLVT FCVYIFGMIL IGFIAWRSTK NFDDYILGGR SLGPFVTALS 
        60         70         80         90        100
AGASDMSGWL LMGLPGAVFL SGISESWIAI GLTLGAWINW KLVAGRLRVH 
       110        120        130        140        150
TEYNNNALTL PDYFTGRFED KSRILRIISA LVILLFFTIY CASGIVAGAR 
       160        170        180        190        200
LFESTFGMSY ETALWAGAAA TILYTFIGGF LAVSWTDTVQ ASLMIFALIL 
       210        220        230        240        250
TPVIVIISVG GFGDSLEVIK QKSIENVDML KGLNFVAIIS LMGWGLGYFG 
       260        270        280        290        300
QPHILARFMA ADSHHSIVHA RRISMTWMIL CLAGAVAVGF FGIAYFNDHP 
       310        320        330        340        350
ALAGAVNQNA ERVFIELAQI LFNPWIAGIL LSAILAAVMS TLSCQLLVCS 
       360        370        380        390        400
SAITEDLYKA FLRKHASQKE LVWVGRVMVL VVALVAIALA ANPENRVLGL 
       410        420        430        440        450
VSYAWAGFGA AFGPVVLFSV MWSRMTRNGA LAGMIIGALT VIVWKQFGWL 
       460        470        480        490        500
GLYEIIPGFI FGSIGIVVFS LLGKAPSAAM QKRFAEADAH YHSAPPSRLQ 

ES
Length:502
Mass (Da):54,344
Last modified:April 1, 1988 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i37AE923C33186356
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
X05653 Genomic DNA Translation: CAA29143.1
U00096 Genomic DNA Translation: AAC74100.1
AP009048 Genomic DNA Translation: BAA35793.1
L01150 Genomic DNA Translation: AAA24463.1
L01151 Genomic DNA Translation: AAA24464.1
M35174 Genomic DNA Translation: AAA24458.1

Protein sequence database of the Protein Information Resource

More...PIRi		A30258, JGECPP

NCBI Reference Sequences

More...RefSeqi		NP_415535.1, NC_000913.3
WP_001018479.1, NZ_SSZK01000002.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		AAC74100; AAC74100; b1015
BAA35793; BAA35793; BAA35793

Database of genes from NCBI RefSeq genomes

More...GeneIDi		945602

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		ecj:JW1001
eco:b1015

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|1411691.4.peg.1254

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X05653 Genomic DNA Translation: CAA29143.1
U00096 Genomic DNA Translation: AAC74100.1
AP009048 Genomic DNA Translation: BAA35793.1
L01150 Genomic DNA Translation: AAA24463.1
L01151 Genomic DNA Translation: AAA24464.1
M35174 Genomic DNA Translation: AAA24458.1
PIRiA30258, JGECPP
RefSeqiNP_415535.1, NC_000913.3
WP_001018479.1, NZ_SSZK01000002.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

BioGRIDi4260051, 14 interactors
849976, 3 interactors
IntActiP07117, 4 interactors
STRINGi511145.b1015

Protein family/group databases

TCDBi2.A.21.2.1, the solute:sodium symporter (sss) family

Proteomic databases

PaxDbiP07117
PRIDEiP07117

Genome annotation databases

EnsemblBacteriaiAAC74100; AAC74100; b1015
BAA35793; BAA35793; BAA35793
GeneIDi945602
KEGGiecj:JW1001
eco:b1015
PATRICifig|1411691.4.peg.1254

Organism-specific databases

EchoBASE - an integrated post-genomic database for E. coli

More...EchoBASEi		EB0795

Phylogenomic databases

eggNOGiCOG0591, Bacteria
HOGENOMiCLU_018808_15_2_6
InParanoidiP07117
PhylomeDBiP07117

Enzyme and pathway databases

BioCyciEcoCyc:PUTP-MONOMER
MetaCyc:PUTP-MONOMER

Miscellaneous databases

Protein Ontology

More...PROi		PR:P07117

Family and domain databases

CDDicd11475, SLC5sbd_PutP, 1 hit
Gene3Di1.20.1730.10, 1 hit
InterProiView protein in InterPro
IPR038377, Na/Glc_symporter_sf
IPR011851, Na/Pro_symporter
IPR001734, Na/solute_symporter
IPR018212, Na/solute_symporter_CS
PfamiView protein in Pfam
PF00474, SSF, 1 hit
TIGRFAMsiTIGR02121, Na_Pro_sym, 1 hit
TIGR00813, sss, 1 hit
PROSITEiView protein in PROSITE
PS00456, NA_SOLUT_SYMP_1, 1 hit
PS00457, NA_SOLUT_SYMP_2, 1 hit
PS50283, NA_SOLUT_SYMP_3, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPUTP_ECOLI
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P07117
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 1, 1988
Last sequence update: April 1, 1988
Last modified: June 2, 2021
This is version 174 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Direct protein sequencing, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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