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UniProtKB - P06516 (CAPP_SYNP6)

Entry version 123 (02 Dec 2020)
Sequence version 1 (01 Jan 1988)
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Protein

Phosphoenolpyruvate carboxylase

Gene

ppc

Organism
Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (Anacystis nidulans)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.By similarity

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>This subsection of the 'Function' section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

Mg2+By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei246By similarity1
Active sitei699By similarity1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionLyase
Biological processCarbon dioxide fixation
LigandMagnesium

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Phosphoenolpyruvate carboxylase (EC:4.1.1.31)
Short name:
PEPC
Short name:
PEPCase
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:ppc
Ordered Locus Names:syc1846_d
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSynechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (Anacystis nidulans)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri269084 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Cyanobacteria › Synechococcales › Synechococcaceae › Synechococcus ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001175 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001666381 – 1053Phosphoenolpyruvate carboxylaseAdd BLAST1053

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		269084.syc1846_d

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		P06516

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the PEPCase type 1 family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		COG2352, Bacteria

Identification of Orthologs from Complete Genome Data

More...OMAi		PWVFGWT

Family and domain databases

HAMAP database of protein families

More...HAMAPi		MF_00595, PEPcase_type1, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR021135, PEP_COase
IPR022805, PEP_COase_bac/pln-type
IPR018129, PEP_COase_Lys_AS
IPR033129, PEPCASE_His_AS
IPR015813, Pyrv/PenolPyrv_Kinase-like_dom

The PANTHER Classification System

More...PANTHERi		PTHR30523, PTHR30523, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00311, PEPcase, 1 hit

Protein Motif fingerprint database; a protein domain database

More...PRINTSi		PR00150, PEPCARBXLASE

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF51621, SSF51621, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS00781, PEPCASE_1, 1 hit
PS00393, PEPCASE_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P06516-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLAVSLRDHG FPSATVQIRP AFCVQSDVVG SGNPPRMNYC QNARTAMSAA 
        60         70         80         90        100
LQSSDDAFRT VSSPLATDLD LSSPLEFFLR HRLTVVEELW EVVLRQECGQ 
       110        120        130        140        150
ELVDILTQLR DLTSPEGQAP EVGGEALVQV IETLELSDAI RAARAFALYF 
       160        170        180        190        200
QLINIVEQHY EQTQYQLAYE RSRLEPLPGP DESPEGLHTI EIPQHQLDPF 
       210        220        230        240        250
AAVIPLNQDP ATFQTLFPRL RQLNVPPQMI QELTDRLDIR LVFTAHPTEI 
       260        270        280        290        300
VRHTIRDKQR RIAYLLRQLD ELETGKNRGF RELEAQNIRQ QLTEEIRLWW 
       310        320        330        340        350
RTDELHQFKP TVLDEVDYAL HYFQEVLFEA IPLLYQRFRL ALQGTFPDLQ 
       360        370        380        390        400
PPRYNFCQFG SWVGSDRDGN PSVTSAVTWQ TACYQRSLVL DRYITAVEHL 
       410        420        430        440        450
RNVLSLSMHW SEVLPELLSS LEQESMLFPE TYEQLAVRYR QEPYRLKLSY 
       460        470        480        490        500
ILERLHNTRD RNTRLQQQQE KDPTTPLPEY RDGTLYQAGT AFLEDLKLIQ 
       510        520        530        540        550
HNLKQTGLSC YELEKLICQV EIFGFNLVHL DIRQESSRHS DAINEICEYL 
       560        570        580        590        600
QILPQPYNEL SEAERTAWLV QELKTRRPLV PARMPFSEST REIIETLRMV 
       610        620        630        640        650
KQLQEEFGEA ACQTYIISMS RELSDLLEVL LLAKEVGLYD PVTGKSSLQV 
       660        670        680        690        700
IPLFETVEDL QNAPRVMTAL FELPFYTQLN PTQSEPLQEV MLGYSDSNKD 
       710        720        730        740        750
SGFLSSNWEI HKAQKALGTV ARDHRVKLRI FHGRGGSVGR GGGPAYEAIL 
       760        770        780        790        800
AQPGRTTDGR IKITEQGEVL ASKYALPELA LYNLETITTA VIQSSLLGSG 
       810        820        830        840        850
FDDIEPWNQI MEELAARSRR HYRALVYEQP DLVDFFNQVT PIEEISKLQI 
       860        870        880        890        900
SSRPARRKTG KRDLGSLRAI PWVFSWTQSR FLLPSWYGVG TALQEFLQER 
       910        920        930        940        950
PEQNLNLLRY FYEKWPFFRM VISKVEMTLA KVDLQIAHHY VHELANPEDQ 
       960        970        980        990       1000
ERFERVFSQI AAEFQLTCHL VLTITNHGRL LDGDPELQRS VQLRNGTIVP 
      1010       1020       1030       1040       1050
LGFLQVALLK RLRQYRQQTE TTGLMRSRYS KGELLRGALL TINGIAAGMR 

NTG
Length:1,053
Mass (Da):121,084
Last modified:January 1, 1988 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i1EDDA7DD8DFFD364
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
M11198 Genomic DNA Translation: AAA22052.1
AP008231 Genomic DNA Translation: BAD80036.1

Protein sequence database of the Protein Information Resource

More...PIRi		A24517, QYYC

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		BAD80036; BAD80036; syc1846_d

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		syc:syc1846_d

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M11198 Genomic DNA Translation: AAA22052.1
AP008231 Genomic DNA Translation: BAD80036.1
PIRiA24517, QYYC

3D structure databases

SMRiP06516
ModBaseiSearch...

Protein-protein interaction databases

STRINGi269084.syc1846_d

Genome annotation databases

EnsemblBacteriaiBAD80036; BAD80036; syc1846_d
KEGGisyc:syc1846_d

Phylogenomic databases

eggNOGiCOG2352, Bacteria
OMAiPWVFGWT

Family and domain databases

HAMAPiMF_00595, PEPcase_type1, 1 hit
InterProiView protein in InterPro
IPR021135, PEP_COase
IPR022805, PEP_COase_bac/pln-type
IPR018129, PEP_COase_Lys_AS
IPR033129, PEPCASE_His_AS
IPR015813, Pyrv/PenolPyrv_Kinase-like_dom
PANTHERiPTHR30523, PTHR30523, 1 hit
PfamiView protein in Pfam
PF00311, PEPcase, 1 hit
PRINTSiPR00150, PEPCARBXLASE
SUPFAMiSSF51621, SSF51621, 1 hit
PROSITEiView protein in PROSITE
PS00781, PEPCASE_1, 1 hit
PS00393, PEPCASE_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiCAPP_SYNP6
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P06516
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 1, 1988
Last sequence update: January 1, 1988
Last modified: December 2, 2020
This is version 123 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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