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UniProtKB - P03606 (CAPSD_STNV1)
Protein
Capsid protein
Gene
N/A
Organism
Satellite tobacco necrosis virus 1
Status
Functioni
Self-assembles to form an icosahedral capsid of 17 nm in diameter.
3 PublicationsCofactori
Ca2+Note: Binds 3 Ca2+ ions per subunit.1 Publication
Sites
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Metal bindingi | 26 | Calcium 11 Publication | 1 | |
Metal bindingi | 26 | Calcium 21 Publication | 1 | |
Metal bindingi | 26 | Calcium 31 Publication | 1 | |
Metal bindingi | 56 | Calcium 11 Publication | 1 | |
Metal bindingi | 56 | Calcium 21 Publication | 1 | |
Metal bindingi | 56 | Calcium 31 Publication | 1 | |
Metal bindingi | 62 | Calcium 1; via carbonyl oxygen2 Publications | 1 | |
Metal bindingi | 65 | Calcium 1; via carbonyl oxygen2 Publications | 1 | |
Metal bindingi | 139 | Calcium 1; via carbonyl oxygen1 Publication | 1 | |
Metal bindingi | 139 | Calcium 2; via carbonyl oxygen1 Publication | 1 | |
Metal bindingi | 139 | Calcium 3; via carbonyl oxygen1 Publication | 1 | |
Metal bindingi | 195 | Calcium 12 Publications | 1 |
GO - Molecular functioni
- metal ion binding Source: UniProtKB-KW
- RNA binding Source: UniProtKB-KW
- structural molecule activity Source: InterPro
Keywordsi
Molecular function | RNA-binding |
Ligand | Calcium, Metal-binding |
Names & Taxonomyi
Protein namesi | Recommended name: Capsid proteinCuratedAlternative name(s): Coat proteinCurated |
Organismi | Satellite tobacco necrosis virus 1 |
Taxonomic identifieri | 12445 [NCBI] |
Taxonomic lineagei | Viruses › Riboviria › Albetovirus › |
Virus hosti | Phaseolus vulgaris (Kidney bean) (French bean) [TaxID: 3885] Tulipa gesneriana (Garden tulip) [TaxID: 13306] |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000222534 | 1 – 196 | Capsid proteinAdd BLAST | 196 |
Structurei
Secondary structure
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details3D structure databases
SMRi | P03606 |
ModBasei | Search... |
PDBe-KBi | Search... |
Miscellaneous databases
EvolutionaryTracei | P03606 |
Family & Domainsi
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1 – 19 | RNA-binding1 PublicationAdd BLAST | 19 |
Family and domain databases
CDDi | cd00259, STNV, 1 hit |
Gene3Di | 2.60.120.20, 1 hit |
InterProi | View protein in InterPro IPR005597, Satellite_CP-like IPR010392, Satellite_virus_coat IPR037164, Satellite_virus_coat_sf IPR029053, Viral_coat |
Pfami | View protein in Pfam PF03898, TNV_CP, 1 hit |
PIRSFi | PIRSF004094, Satellite_CP, 1 hit |
SUPFAMi | SSF88650, SSF88650, 1 hit |
i Sequence
Sequence statusi: Complete.
P03606-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MAKQQNNRRK SATMRAVKRM INTHLEHKRF ALINSGNTNA TAGTVQNLSN
60 70 80 90 100
GIIQGDDINQ RSGDQVRIVS HKLHVRGTAI TVSQTFRFIW FRDNMNRGTT
110 120 130 140 150
PTVLEVLNTA NFMSQYNPIT LQQKRFTILK DVTLNCSLTG ESIKDRIINL
160 170 180 190
PGQLVNYNGA TAVAASNGPG AIFMLQIGDS LVGLWDSSYE AVYTDA
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | V01468 Genomic RNA Translation: CAA24714.1 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | V01468 Genomic RNA Translation: CAA24714.1 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
2BUK | X-ray | 2.45 | A | 1-196 | [»] | |
3S4G | X-ray | 6.00 | A | 1-196 | [»] | |
4BCU | X-ray | 2.29 | A | 1-196 | [»] | |
4V4M | X-ray | 1.45 | 0/1/2/3/4/5/6/7/A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/S/T/U/V/W/X/Y/Z/a/b/c/d/e/f/g/h/i/j/k/l/m/n/o/p/q/r/s/t/u/v/w/x/y/z | 1-196 | [»] | |
SMRi | P03606 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Miscellaneous databases
EvolutionaryTracei | P03606 |
Family and domain databases
CDDi | cd00259, STNV, 1 hit |
Gene3Di | 2.60.120.20, 1 hit |
InterProi | View protein in InterPro IPR005597, Satellite_CP-like IPR010392, Satellite_virus_coat IPR037164, Satellite_virus_coat_sf IPR029053, Viral_coat |
Pfami | View protein in Pfam PF03898, TNV_CP, 1 hit |
PIRSFi | PIRSF004094, Satellite_CP, 1 hit |
SUPFAMi | SSF88650, SSF88650, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | CAPSD_STNV1 | |
Accessioni | P03606Primary (citable) accession number: P03606 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | July 21, 1986 |
Last sequence update: | July 21, 1986 | |
Last modified: | June 2, 2021 | |
This is version 112 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Viral Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
3D-structure, Reference proteomeDocuments
- PDB cross-references
Index of Protein Data Bank (PDB) cross-references