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UniProtKB - P02407 (RS17A_YEAST)

Entry version 166 (05 Jun 2019)
Sequence version 1 (21 Jul 1986)
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Protein

40S ribosomal protein S17-A

Gene

RPS17A

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through a tunnel in the LSU and interact with protein factors that function in enzymatic processing, targeting, and the membrane insertion of nascent chains at the exit of the ribosomal tunnel.1 Publication

Miscellaneous

Present with 30900 molecules/cell in log phase SD medium.1 Publication
There are 2 genes for eS17 in yeast.Curated

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • structural constituent of ribosome Source: SGD
Complete GO annotation on QuickGO ...

GO - Biological processi

  • cytoplasmic translation Source: SGD
  • ribosomal small subunit assembly Source: SGD
Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		YEAST:G3O-32626-MONOMER

Reactome - a knowledgebase of biological pathways and processes

More...Reactomei		R-SCE-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-SCE-1799339 SRP-dependent cotranslational protein targeting to membrane
R-SCE-72689 Formation of a pool of free 40S subunits
R-SCE-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-SCE-72702 Ribosomal scanning and start codon recognition
R-SCE-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-SCE-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-SCE-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
40S ribosomal protein S17-A1 Publication
Alternative name(s):
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:RPS17A1 Publication
Synonyms:RP51A
Ordered Locus Names:YML024W
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri559292 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Fungi › Dikarya › Ascomycota › Saccharomycotina › Saccharomycetes › Saccharomycetales › Saccharomycetaceae › Saccharomyces ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002311 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome XIII

Organism-specific databases

Eukaryotic Pathogen Database Resources

More...EuPathDBi		FungiDB:YML024W

Saccharomyces Genome Database

More...SGDi		S000004486 RPS17A

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001415461 – 13640S ribosomal protein S17-AAdd BLAST136

Proteomic databases

MaxQB - The MaxQuant DataBase

More...MaxQBi		P02407

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		P02407

PRoteomics IDEntifications database

More...PRIDEi		P02407

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		P02407

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Component of the small ribosomal subunit (SSU). Mature yeast ribosomes consist of a small (40S) and a large (60S) subunit. The 40S small subunit contains 1 molecule of ribosomal RNA (18S rRNA) and 33 different proteins (encoded by 57 genes). The large 60S subunit contains 3 rRNA molecules (25S, 5.8S and 5S rRNA) and 46 different proteins (encoded by 81 genes) (PubMed:9559554, PubMed:22096102).1 Publication1 Publication

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...BioGridi		35145, 120 interactors

Protein interaction database and analysis system

More...IntActi		P02407, 63 interactors

Molecular INTeraction database

More...MINTi		P02407

STRING: functional protein association networks

More...STRINGi		4932.YML024W

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1136
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		P02407

Database of comparative protein structure models

More...ModBasei		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the eukaryotic ribosomal protein eS17 family.Curated

Phylogenomic databases

Ensembl GeneTree

More...GeneTreei		ENSGT00390000006548

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		HOG000227166

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		P02407

KEGG Orthology (KO)

More...KOi		K02962

Identification of Orthologs from Complete Genome Data

More...OMAi		FITHMMK

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.10.60.20, 1 hit

HAMAP database of protein families

More...HAMAPi		MF_00511 Ribosomal_S17e, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR001210 Ribosomal_S17e
IPR018273 Ribosomal_S17e_CS
IPR036401 RPS17e-like_sf

The PANTHER Classification System

More...PANTHERi		PTHR10732 PTHR10732, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00833 Ribosomal_S17e, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF116820 SSF116820, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS00712 RIBOSOMAL_S17E, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

P02407-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGRVRTKTVK RASKALIERY YPKLTLDFQT NKRLCDEIAT IQSKRLRNKI 
        60         70         80         90        100
AGYTTHLMKR IQKGPVRGIS FKLQEEERER KDQYVPEVSA LDLSRSNGVL 
       110        120        130 
NVDNQTSDLV KSLGLKLPLS VINVSAQRDR RYRKRV
Length:136
Mass (Da):15,788
Last modified:July 21, 1986 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i956E5382870EA289
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
J01349 Genomic DNA Translation: AAA88733.1
Z46659 Genomic DNA Translation: CAA86631.1
BK006946 Genomic DNA Translation: DAA09874.1

Protein sequence database of the Protein Information Resource

More...PIRi		A02784 R5BY51

NCBI Reference Sequences

More...RefSeqi		NP_013688.1, NM_001182382.1

Genome annotation databases

Ensembl fungal genome annotation project

More...EnsemblFungii		YML024W_mRNA; YML024W_mRNA; YML024W

Database of genes from NCBI RefSeq genomes

More...GeneIDi		854984

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		sce:YML024W

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J01349 Genomic DNA Translation: AAA88733.1
Z46659 Genomic DNA Translation: CAA86631.1
BK006946 Genomic DNA Translation: DAA09874.1
PIRiA02784 R5BY51
RefSeqiNP_013688.1, NM_001182382.1

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...PDBei

Protein Data Bank RCSB

More...RCSB PDBi

Protein Data Bank Japan

More...PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3J6Xelectron microscopy6.10171-136[»]
3J6Yelectron microscopy6.10171-136[»]
3J77electron microscopy6.20171-136[»]
3J78electron microscopy6.30171-136[»]
4U3MX-ray3.00C7/c71-136[»]
4U3NX-ray3.20C7/c71-136[»]
4U3UX-ray2.90C7/c71-136[»]
4U4NX-ray3.10C7/c71-136[»]
4U4OX-ray3.60C7/c71-136[»]
4U4QX-ray3.00C7/c71-136[»]
4U4RX-ray2.80C7/c71-136[»]
4U4UX-ray3.00C7/c71-136[»]
4U4YX-ray3.20C7/c71-136[»]
4U4ZX-ray3.10C7/c71-136[»]
4U50X-ray3.20C7/c71-136[»]
4U51X-ray3.20C7/c71-136[»]
4U52X-ray3.00C7/c71-136[»]
4U53X-ray3.30C7/c71-136[»]
4U55X-ray3.20C7/c71-136[»]
4U56X-ray3.45C7/c71-136[»]
4U6FX-ray3.10C7/c71-136[»]
4V6Ielectron microscopy8.80AQ1-136[»]
4V7RX-ray4.00AK/CK1-136[»]
4V88X-ray3.00AR/CR1-136[»]
4V8Yelectron microscopy4.30AR1-136[»]
4V8Zelectron microscopy6.60AR1-136[»]
4V92electron microscopy3.70R2-125[»]
5DATX-ray3.15C7/c71-136[»]
5DC3X-ray3.25C7/c71-136[»]
5DGEX-ray3.45C7/c71-136[»]
5DGFX-ray3.30C7/c71-136[»]
5DGVX-ray3.10C7/c71-136[»]
5FCIX-ray3.40C7/c71-136[»]
5FCJX-ray3.10C7/c71-136[»]
5I4LX-ray3.10C7/c71-136[»]
5JUOelectron microscopy4.00OB1-136[»]
5JUPelectron microscopy3.50OB1-136[»]
5JUSelectron microscopy4.20OB1-136[»]
5JUTelectron microscopy4.00OB1-136[»]
5JUUelectron microscopy4.00OB1-136[»]
5LYBX-ray3.25C7/c72-126[»]
5MEIX-ray3.50c72-122[»]
5NDGX-ray3.70C7/c71-136[»]
5NDVX-ray3.30C7/c71-136[»]
5NDWX-ray3.70C7/c71-136[»]
5OBMX-ray3.40C7/c71-136[»]
5ON6X-ray3.10S/c72-126[»]
5TBWX-ray3.00S2-126[»]
c72-122[»]
6EMLelectron microscopy3.60C1-136[»]
6FAIelectron microscopy3.40R1-136[»]
6HHQX-ray3.10S/c71-136[»]
6I7Oelectron microscopy5.30G/Gb2-126[»]
6Q8Yelectron microscopy3.10G2-126[»]
SMRiP02407
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi35145, 120 interactors
IntActiP02407, 63 interactors
MINTiP02407
STRINGi4932.YML024W

PTM databases

iPTMnetiP02407

Proteomic databases

MaxQBiP02407
PaxDbiP02407
PRIDEiP02407

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYML024W_mRNA; YML024W_mRNA; YML024W
GeneIDi854984
KEGGisce:YML024W

Organism-specific databases

EuPathDBiFungiDB:YML024W
SGDiS000004486 RPS17A

Phylogenomic databases

GeneTreeiENSGT00390000006548
HOGENOMiHOG000227166
InParanoidiP02407
KOiK02962
OMAiFITHMMK

Enzyme and pathway databases

BioCyciYEAST:G3O-32626-MONOMER
ReactomeiR-SCE-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-SCE-1799339 SRP-dependent cotranslational protein targeting to membrane
R-SCE-72689 Formation of a pool of free 40S subunits
R-SCE-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-SCE-72702 Ribosomal scanning and start codon recognition
R-SCE-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-SCE-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-SCE-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Miscellaneous databases

Protein Ontology

More...PROi		PR:P02407

Family and domain databases

Gene3Di1.10.60.20, 1 hit
HAMAPiMF_00511 Ribosomal_S17e, 1 hit
InterProiView protein in InterPro
IPR001210 Ribosomal_S17e
IPR018273 Ribosomal_S17e_CS
IPR036401 RPS17e-like_sf
PANTHERiPTHR10732 PTHR10732, 1 hit
PfamiView protein in Pfam
PF00833 Ribosomal_S17e, 1 hit
SUPFAMiSSF116820 SSF116820, 1 hit
PROSITEiView protein in PROSITE
PS00712 RIBOSOMAL_S17E, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRS17A_YEAST
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: P02407
Secondary accession number(s): D6VZF0
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: July 21, 1986
Last modified: June 5, 2019
This is version 166 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
  4. SIMILARITY comments
    Index of protein domains and families
  5. Yeast chromosome XIII
    Yeast (Saccharomyces cerevisiae) chromosome XIII: entries and gene names
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