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Entry version 141 (13 Feb 2019)
Sequence version 2 (16 Dec 2008)
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Protein

Sciellin

Gene

SCEL

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

May function in the assembly or regulation of proteins in the cornified envelope. The LIM domain may be involved in homotypic or heterotypic associations and may function to localize sciellin to the cornified envelope.

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

  • embryo development ending in birth or egg hatching Source: UniProtKB
  • epidermis development Source: UniProtKB
  • keratinocyte differentiation Source: UniProtKB
  • positive regulation of canonical Wnt signaling pathway Source: BHF-UCL
  • response to mechanical stimulus Source: BHF-UCL

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Sciellin
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:SCEL
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHomo sapiens (Human)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9606 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000005640 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 13

Organism-specific databases

Eukaryotic Pathogen Database Resources

More...
EuPathDBi
HostDB:ENSG00000136155.16

Human Gene Nomenclature Database

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HGNCi
HGNC:10573 SCEL

Online Mendelian Inheritance in Man (OMIM)

More...
MIMi
604112 gene

neXtProt; the human protein knowledge platform

More...
neXtProti
NX_O95171

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Membrane

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Organism-specific databases

DisGeNET

More...
DisGeNETi
8796

Open Targets

More...
OpenTargetsi
ENSG00000136155

The Pharmacogenetics and Pharmacogenomics Knowledge Base

More...
PharmGKBi
PA34986

Polymorphism and mutation databases

BioMuta curated single-nucleotide variation and disease association database

More...
BioMutai
SCEL

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00000759031 – 688SciellinAdd BLAST688

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei83N6-acetyllysineBy similarity1
Modified residuei289PhosphoserineBy similarity1
Modified residuei389PhosphoserineBy similarity1

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

Encyclopedia of Proteome Dynamics

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EPDi
O95171

jPOST - Japan Proteome Standard Repository/Database

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jPOSTi
O95171

MaxQB - The MaxQuant DataBase

More...
MaxQBi
O95171

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
O95171

PeptideAtlas

More...
PeptideAtlasi
O95171

PRoteomics IDEntifications database

More...
PRIDEi
O95171

ProteomicsDB human proteome resource

More...
ProteomicsDBi
50686
50687 [O95171-2]

PTM databases

GlyConnect protein glycosylation platform

More...
GlyConnecti
1724

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
O95171

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
O95171

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Highly expressed in esophagus. It is also expressed in keratinocytes, amniotic tissue, foreskin stratum spinosum and stratum granulosum, hair follicle and nail.

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSG00000136155 Expressed in 118 organ(s), highest expression level in mouth mucosa

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
O95171 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
O95171 HS

Organism-specific databases

Human Protein Atlas

More...
HPAi
HPA039737
HPA040154

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
114324, 13 interactors

Protein interaction database and analysis system

More...
IntActi
O95171, 11 interactors

Molecular INTeraction database

More...
MINTi
O95171

STRING: functional protein association networks

More...
STRINGi
9606.ENSP00000302579

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
O95171

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati251 – 2661Add BLAST16
Repeati267 – 2862Add BLAST20
Repeati287 – 3063Add BLAST20
Repeati307 – 3264Add BLAST20
Repeati327 – 3465Add BLAST20
Repeati347 – 3666Add BLAST20
Repeati367 – 3867Add BLAST20
Repeati387 – 4068Add BLAST20
Repeati407 – 4269Add BLAST20
Repeati427 – 44610Add BLAST20
Repeati447 – 46511Add BLAST19
Repeati466 – 48412Add BLAST19
Repeati485 – 50413Add BLAST20
Repeati505 – 52314Add BLAST19
Repeati524 – 54315Add BLAST20
Repeati544 – 56316Add BLAST20
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini619 – 685LIM zinc-bindingPROSITE-ProRule annotationAdd BLAST67

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni251 – 56316 X approximate tandem repeatsAdd BLAST313

Keywords - Domaini

LIM domain, Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410INGG Eukaryota
ENOG4111UEX LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00530000063872

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000294069

The HOVERGEN Database of Homologous Vertebrate Genes

More...
HOVERGENi
HBG023141

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
O95171

Identification of Orthologs from Complete Genome Data

More...
OMAi
ICPPKPG

Database of Orthologous Groups

More...
OrthoDBi
876581at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
O95171

TreeFam database of animal gene trees

More...
TreeFami
TF335114

Family and domain databases

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR001781 Znf_LIM

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00132 LIM, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00478 LIM_DOMAIN_1, 1 hit
PS50023 LIM_DOMAIN_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (3+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 3 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 3 described isoforms and 1 potential isoform that is computationally mapped.Show allAlign All

Isoform 1 (identifier: O95171-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MSNVTLRKMS PTGNEMKSTT QGTTRKQQDF HEVNKRRTFL QDNSWIKKRP
60 70 80 90 100
EEEKDENYGR VVLNRHNSHD ALDRKVNERD VPKATISRYS SDDTLDRISD
110 120 130 140 150
RNDAAKTYKA NTLDNQLTNR SMSMFRSLEV TKLQPGGSLN ANTSNTIAST
160 170 180 190 200
SATTPVKKKR QSWFPPPPPG YNASSSTGTR RREPGVHPPI PPKPSSPVSS
210 220 230 240 250
PNQLRQDNRQ IHPPKPGVYT ETNRSAERNI RSQDLDNIVK VATSLQRSDK
260 270 280 290 300
GEELDNLIKM NKSLNRNQGL DSLFRANPKV EEREKRAKSL ESLIYMSTRT
310 320 330 340 350
DKDGKGIQSL GSPIKVNQRT DKNEKGRQNL ESVAKVNARM NKTSRRSEDL
360 370 380 390 400
DNATEVNPKG HENTTGKKDL DGLIKVDPET NKNITRGQSL DNLIKVTPEV
410 420 430 440 450
KRSNQGSKDL NNFIKVYPGT EKSTEGGQSL DSLIKVTPER NRTNQGNQDL
460 470 480 490 500
ENLIKVIPSA NKSSEQGLDE HINVSPKAVK NTDGKQDLDK LIKVNPEIFT
510 520 530 540 550
NNQRNQDLAN LIKVNPAVIR NNQSQDLDNL IKVKPSALRN TNRDQNLENL
560 570 580 590 600
IEVNSHVSEN KNGSSNTGAK QAGPQDTVVY TRTYVENSKS PKDGYQENIS
610 620 630 640 650
GKYIQTVYST SDRSVIERDM CTYCRKPLGV ETKMILDELQ ICCHSTCFKC
660 670 680
EICKQPLENL QAGDSIWIYR QTIHCEPCYS KIMAKWIP
Length:688
Mass (Da):77,552
Last modified:December 16, 2008 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iB97F62DD560B57C3
GO
Isoform 2 (identifier: O95171-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     231-251: RSQDLDNIVKVATSLQRSDKG → S

Show »
Length:668
Mass (Da):75,326
Checksum:i119DB006BB85EC13
GO
Isoform 3 (identifier: O95171-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     160-181: Missing.
     367-386: Missing.

Note: No experimental confirmation available.
Show »
Length:646
Mass (Da):72,843
Checksum:iBDA3D0960363AEFC
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F2Z2X8F2Z2X8_HUMAN
Sciellin
SCEL
283Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti37R → G in BAH13533 (PubMed:14702039).Curated1
Sequence conflicti124M → V in AAH47536 (PubMed:15489334).Curated1
Sequence conflicti201P → T in AAH47536 (PubMed:15489334).Curated1
Sequence conflicti337N → D in AAC78461 (PubMed:9813070).Curated1
Sequence conflicti340M → T in AAC78461 (PubMed:9813070).Curated1
Sequence conflicti680S → P in BAD96440 (Ref. 3) Curated1

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes natural variant(s) of the protein sequence.<p><a href='/help/variant' target='_top'>More...</a></p>Natural variantiVAR_047920336V → L. Corresponds to variant dbSNP:rs34164479Ensembl.1
Natural variantiVAR_047921386R → K. Corresponds to variant dbSNP:rs2274016Ensembl.1
Natural variantiVAR_047922480K → R. Corresponds to variant dbSNP:rs8002725Ensembl.1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_045288160 – 181Missing in isoform 3. 1 PublicationAdd BLAST22
Alternative sequenceiVSP_035980231 – 251RSQDL…RSDKG → S in isoform 2. 2 PublicationsAdd BLAST21
Alternative sequenceiVSP_045289367 – 386Missing in isoform 3. 1 PublicationAdd BLAST20

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF045941 mRNA Translation: AAC78461.1
AK301659 mRNA Translation: BAH13533.1
AK222720 mRNA Translation: BAD96440.1
AL137140 Genomic DNA No translation available.
CH471093 Genomic DNA Translation: EAW80568.1
CH471093 Genomic DNA Translation: EAW80569.1
BC047536 mRNA Translation: AAH47536.1

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS53877.1 [O95171-3]
CCDS9458.1 [O95171-2]
CCDS9459.1 [O95171-1]

NCBI Reference Sequences

More...
RefSeqi
NP_001154178.1, NM_001160706.1 [O95171-3]
NP_003834.3, NM_003843.3 [O95171-2]
NP_659001.2, NM_144777.2 [O95171-1]

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
Hs.534699

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENST00000349847; ENSP00000302579; ENSG00000136155 [O95171-1]
ENST00000377246; ENSP00000366454; ENSG00000136155 [O95171-2]
ENST00000535157; ENSP00000437895; ENSG00000136155 [O95171-3]

Database of genes from NCBI RefSeq genomes

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GeneIDi
8796

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
hsa:8796

UCSC genome browser

More...
UCSCi
uc001vki.4 human [O95171-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF045941 mRNA Translation: AAC78461.1
AK301659 mRNA Translation: BAH13533.1
AK222720 mRNA Translation: BAD96440.1
AL137140 Genomic DNA No translation available.
CH471093 Genomic DNA Translation: EAW80568.1
CH471093 Genomic DNA Translation: EAW80569.1
BC047536 mRNA Translation: AAH47536.1
CCDSiCCDS53877.1 [O95171-3]
CCDS9458.1 [O95171-2]
CCDS9459.1 [O95171-1]
RefSeqiNP_001154178.1, NM_001160706.1 [O95171-3]
NP_003834.3, NM_003843.3 [O95171-2]
NP_659001.2, NM_144777.2 [O95171-1]
UniGeneiHs.534699

3D structure databases

ProteinModelPortaliO95171
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi114324, 13 interactors
IntActiO95171, 11 interactors
MINTiO95171
STRINGi9606.ENSP00000302579

PTM databases

GlyConnecti1724
iPTMnetiO95171
PhosphoSitePlusiO95171

Polymorphism and mutation databases

BioMutaiSCEL

Proteomic databases

EPDiO95171
jPOSTiO95171
MaxQBiO95171
PaxDbiO95171
PeptideAtlasiO95171
PRIDEiO95171
ProteomicsDBi50686
50687 [O95171-2]

Protocols and materials databases

The DNASU plasmid repository

More...
DNASUi
8796
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000349847; ENSP00000302579; ENSG00000136155 [O95171-1]
ENST00000377246; ENSP00000366454; ENSG00000136155 [O95171-2]
ENST00000535157; ENSP00000437895; ENSG00000136155 [O95171-3]
GeneIDi8796
KEGGihsa:8796
UCSCiuc001vki.4 human [O95171-1]

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
8796
DisGeNETi8796
EuPathDBiHostDB:ENSG00000136155.16

GeneCards: human genes, protein and diseases

More...
GeneCardsi
SCEL
HGNCiHGNC:10573 SCEL
HPAiHPA039737
HPA040154
MIMi604112 gene
neXtProtiNX_O95171
OpenTargetsiENSG00000136155
PharmGKBiPA34986

GenAtlas: human gene database

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GenAtlasi
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Phylogenomic databases

eggNOGiENOG410INGG Eukaryota
ENOG4111UEX LUCA
GeneTreeiENSGT00530000063872
HOGENOMiHOG000294069
HOVERGENiHBG023141
InParanoidiO95171
OMAiICPPKPG
OrthoDBi876581at2759
PhylomeDBiO95171
TreeFamiTF335114

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

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ChiTaRSi
SCEL human

The Gene Wiki collection of pages on human genes and proteins

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GeneWikii
SCEL_(gene)

Database of phenotypes from RNA interference screens in Drosophila and Homo sapiens

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GenomeRNAii
8796

Protein Ontology

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PROi
PR:O95171

The Stanford Online Universal Resource for Clones and ESTs

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SOURCEi
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Gene expression databases

BgeeiENSG00000136155 Expressed in 118 organ(s), highest expression level in mouth mucosa
ExpressionAtlasiO95171 baseline and differential
GenevisibleiO95171 HS

Family and domain databases

InterProiView protein in InterPro
IPR001781 Znf_LIM
SMARTiView protein in SMART
SM00132 LIM, 1 hit
PROSITEiView protein in PROSITE
PS00478 LIM_DOMAIN_1, 1 hit
PS50023 LIM_DOMAIN_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiSCEL_HUMAN
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: O95171
Secondary accession number(s): B7Z797
, F5H651, Q53H61, Q5W0S8, Q5W0S9, Q86X00
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 23, 2002
Last sequence update: December 16, 2008
Last modified: February 13, 2019
This is version 141 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Human chromosome 13
    Human chromosome 13: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  3. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  4. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
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