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Entry version 117 (02 Jun 2021)
Sequence version 3 (21 Aug 2007)
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Protein

DNA repair protein rev1

Gene

rev1

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents. Involved in mitochondrial DNA mutagenesis (By similarity).

By similarity

<p>This subsection of the 'Function' section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

Mg2+By similarityNote: Binds 2 magnesium ions.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei240dCTPBy similarity1
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the 'Description' field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi283Magnesium 1PROSITE-ProRule annotation1
Metal bindingi283Magnesium 2PROSITE-ProRule annotation1
Metal bindingi284Magnesium 2; via carbonyl oxygenPROSITE-ProRule annotation1
Binding sitei329dCTPBy similarity1
Metal bindingi378Magnesium 1PROSITE-ProRule annotation1
Binding sitei378dCTPBy similarity1
Metal bindingi379Magnesium 1PROSITE-ProRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi283 – 287dCTP bindingBy similarity5
Nucleotide bindingi317 – 323dCTP bindingBy similarity7

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-binding, Nucleotidyltransferase, Transferase
Biological processDNA damage, DNA repair, DNA synthesis
LigandMagnesium, Metal-binding

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-SPO-110312, Translesion synthesis by REV1
R-SPO-5655862, Translesion synthesis by POLK
R-SPO-5656121, Translesion synthesis by POLI
R-SPO-5656169, Termination of translesion DNA synthesis

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
DNA repair protein rev1By similarity (EC:2.7.7.-)
Alternative name(s):
Reversionless protein 1By similarity
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:rev1Imported
ORF Names:SPBC1347.01c
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri284812 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002485 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome II

Organism-specific databases

Schizosaccharomyces pombe database

More...
PomBasei
SPBC1347.01c, rev1

Eukaryotic Pathogen, Vector and Host Database Resources

More...
VEuPathDBi
FungiDB:SPBC1347.01c

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Cytoplasm, Cytoskeleton, Mitochondrion, Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003616841 – 935DNA repair protein rev1Add BLAST935

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
O94623

PRoteomics IDEntifications database

More...
PRIDEi
O94623

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection describes interesting single amino acid sites on the sequence that are not defined in any other subsection. This subsection can be displayed in different sections ('Function', 'PTM / Processing', 'Pathology and Biotech') according to its content.<p><a href='/help/site' target='_top'>More...</a></p>Sitei578Interaction with target DNABy similarity1
Sitei589Interaction with target DNABy similarity1
Sitei591Interaction with target DNABy similarity1

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
276276, 9 interactors

Protein interaction database and analysis system

More...
IntActi
O94623, 1 interactor

STRING: functional protein association networks

More...
STRINGi
4896.SPBC1347.01c.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
O94623

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini59 – 147BRCTPROSITE-ProRule annotationAdd BLAST89
Domaini279 – 460UmuCPROSITE-ProRule annotationAdd BLAST182

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni162 – 193DisorderedSequence analysisAdd BLAST32
Regioni235 – 245Interaction with target DNABy similarityAdd BLAST11
Regioni310 – 312Interaction with target DNABy similarity3
Regioni460 – 463Interaction with target DNABy similarity4
Regioni517 – 525Interaction with target DNABy similarity9

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi176 – 193Basic and acidic residuesSequence analysisAdd BLAST18

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the DNA polymerase type-Y family.Sequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG2093, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_003901_1_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
O94623

Identification of Orthologs from Complete Genome Data

More...
OMAi
QIYDIFF

Database for complete collections of gene phylogenies

More...
PhylomeDBi
O94623

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.20.58.1280, 1 hit
3.30.1490.100, 1 hit
3.30.70.270, 1 hit
3.40.50.10190, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR001357, BRCT_dom
IPR036420, BRCT_dom_sf
IPR043502, DNA/RNA_pol_sf
IPR036775, DNA_pol_Y-fam_lit_finger_sf
IPR017961, DNA_pol_Y-fam_little_finger
IPR012112, REV1
IPR031991, Rev1_C
IPR038401, Rev1_C_sf
IPR043128, Rev_trsase/Diguanyl_cyclase
IPR001126, UmuC

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF16589, BRCT_2, 1 hit
PF00817, IMS, 1 hit
PF11799, IMS_C, 1 hit
PF16727, REV1_C, 1 hit

PIRSF; a whole-protein classification database

More...
PIRSFi
PIRSF036573, REV1, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00292, BRCT, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF100879, SSF100879, 1 hit
SSF52113, SSF52113, 1 hit
SSF56672, SSF56672, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50172, BRCT, 1 hit
PS50173, UMUC, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

O94623-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAFNQRKRRR PVGIADFDEA NDEAYESVGF HDYADYFSRK QRKLQNQNAA
60 70 80 90 100
LYKSIDEDSK SDLFHGLAIA INGYTKPSYT ELRQMIVSNG GTFIQYVDGK
110 120 130 140 150
TSISYLVCSF LTPSKARQWK HQKVVKPEWI VDCIKQKKIL PWINYRTFQA
160 170 180 190 200
SSAQATLSFV ASKPSQPEGN LEDIQTSSQE EEHDNEKDKT KESKAKGFLD
210 220 230 240 250
DLSGLSASSL HNYQLLKNPN VRNSTTQNQD FLENFFSSSR LHHLSTWKAD
260 270 280 290 300
FKNEIQAMTT ASEPVRPIMK DKSKKSRFLL HVDFDCFFAS VSTRFSHELR
310 320 330 340 350
LKPVAVAHGI KNSEIASCNY EARKFGIKNG MYVGTAKNLC PSLRVVDYDF
360 370 380 390 400
GAYESVSREF YTILVNTLHD YIKVISIDEA LLDITSSVSS FQDCFEIAES
410 420 430 440 450
IRSQVREKTN CEVSVGIGPN VLLARLALRK AKPHNVYSLS IENVFDVLSP
460 470 480 490 500
LSVQDLPGVG SSQAQKLFNL YGVRTIGQLQ RIEKFNLQET FGVNYGLHLY
510 520 530 540 550
NISRGIDTDI INNETPRRSI SVDVNWGVRF VFQEDGIDFL KRLLHELLSR
560 570 580 590 600
MGKCQVLLHQ IQLRILKRAD GAPFSPPKYL GAGEVTSFTK SSTFTSATNS
610 620 630 640 650
FDLIWKKVTS MYKTINVDPG DVRGIGLQAL KIIKDNSKIR KDYRSIQSIT
660 670 680 690 700
SRNKVSLKGA SVDISSKDKE IISQKKQLSP KLIPSTPYDL PSSSQISSSA
710 720 730 740 750
LAQLPPSMQS DIQQQLRLQK RSITEYPSQL DPLFMVELPT PIRNEVNDNH
760 770 780 790 800
EIAMNKRLSL KSHADNKIDE RGKKKIRQEN AFDKLLQISK KSKTINKPNV
810 820 830 840 850
DYLTLKELPK DLQKQILKES NLQKSDLISE VKLEKPHIVT FQHVQSLEDL
860 870 880 890 900
RGLLTKWYSK ASKGPNIHDV NYFANYVCRV IREEKNLGKA QMMLKWLYQL
910 920 930
NRKECNKPWE KAIDKIIETV QGECLQRNIP PLMIF
Length:935
Mass (Da):106,526
Last modified:August 21, 2007 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iB1A472DDA37085FC
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CU329671 Genomic DNA Translation: CAA22130.2

NCBI Reference Sequences

More...
RefSeqi
NP_596693.2, NM_001022616.3

Genome annotation databases

Ensembl fungal genome annotation project

More...
EnsemblFungii
SPBC1347.01c.1; SPBC1347.01c.1:pep; SPBC1347.01c

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
2539723

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
spo:SPBC1347.01c

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA Translation: CAA22130.2
RefSeqiNP_596693.2, NM_001022616.3

3D structure databases

SMRiO94623
ModBaseiSearch...

Protein-protein interaction databases

BioGRIDi276276, 9 interactors
IntActiO94623, 1 interactor
STRINGi4896.SPBC1347.01c.1

Proteomic databases

PaxDbiO94623
PRIDEiO94623

Genome annotation databases

EnsemblFungiiSPBC1347.01c.1; SPBC1347.01c.1:pep; SPBC1347.01c
GeneIDi2539723
KEGGispo:SPBC1347.01c

Organism-specific databases

PomBaseiSPBC1347.01c, rev1
VEuPathDBiFungiDB:SPBC1347.01c

Phylogenomic databases

eggNOGiKOG2093, Eukaryota
HOGENOMiCLU_003901_1_0_1
InParanoidiO94623
OMAiQIYDIFF
PhylomeDBiO94623

Enzyme and pathway databases

ReactomeiR-SPO-110312, Translesion synthesis by REV1
R-SPO-5655862, Translesion synthesis by POLK
R-SPO-5656121, Translesion synthesis by POLI
R-SPO-5656169, Termination of translesion DNA synthesis

Miscellaneous databases

Protein Ontology

More...
PROi
PR:O94623

Family and domain databases

Gene3Di1.20.58.1280, 1 hit
3.30.1490.100, 1 hit
3.30.70.270, 1 hit
3.40.50.10190, 1 hit
InterProiView protein in InterPro
IPR001357, BRCT_dom
IPR036420, BRCT_dom_sf
IPR043502, DNA/RNA_pol_sf
IPR036775, DNA_pol_Y-fam_lit_finger_sf
IPR017961, DNA_pol_Y-fam_little_finger
IPR012112, REV1
IPR031991, Rev1_C
IPR038401, Rev1_C_sf
IPR043128, Rev_trsase/Diguanyl_cyclase
IPR001126, UmuC
PfamiView protein in Pfam
PF16589, BRCT_2, 1 hit
PF00817, IMS, 1 hit
PF11799, IMS_C, 1 hit
PF16727, REV1_C, 1 hit
PIRSFiPIRSF036573, REV1, 1 hit
SMARTiView protein in SMART
SM00292, BRCT, 1 hit
SUPFAMiSSF100879, SSF100879, 1 hit
SSF52113, SSF52113, 1 hit
SSF56672, SSF56672, 1 hit
PROSITEiView protein in PROSITE
PS50172, BRCT, 1 hit
PS50173, UMUC, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiREV1_SCHPO
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: O94623
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: August 21, 2007
Last modified: June 2, 2021
This is version 117 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
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