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UniProtKB - O94599 (YC8B_SCHPO)

Entry version 97 (29 Sep 2021)
Sequence version 1 (01 May 1999)
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Protein

LIMR family protein C622.11

Gene

SPCC622.11

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
LIMR family protein C622.11
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:SPCC622.11
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri284812 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Fungi › Dikarya › Ascomycota › Taphrinomycotina › Schizosaccharomycetes › Schizosaccharomycetales › Schizosaccharomycetaceae › Schizosaccharomyces ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002485 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome III

Organism-specific databases

Schizosaccharomyces pombe database

More...PomBasei		SPCC622.11

Eukaryotic Pathogen, Vector and Host Database Resources

More...VEuPathDBi		FungiDB:SPCC622.11

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the subcellular compartment where each non-membrane region of a membrane-spanning protein is found.<p><a href='/help/topo_dom' target='_top'>More...</a></p>Topological domaini1 – 22LumenalSequence analysisAdd BLAST22
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei23 – 43HelicalSequence analysisAdd BLAST21
Topological domaini44 – 55CytoplasmicSequence analysisAdd BLAST12
Transmembranei56 – 76HelicalSequence analysisAdd BLAST21
Topological domaini77 – 87LumenalSequence analysisAdd BLAST11
Transmembranei88 – 108HelicalSequence analysisAdd BLAST21
Topological domaini109 – 121CytoplasmicSequence analysisAdd BLAST13
Transmembranei122 – 142HelicalSequence analysisAdd BLAST21
Topological domaini143 – 164LumenalSequence analysisAdd BLAST22
Transmembranei165 – 185HelicalSequence analysisAdd BLAST21
Topological domaini186 – 198CytoplasmicSequence analysisAdd BLAST13
Transmembranei199 – 219HelicalSequence analysisAdd BLAST21
Topological domaini220 – 329LumenalSequence analysisAdd BLAST110
Transmembranei330 – 350HelicalSequence analysisAdd BLAST21
Topological domaini351CytoplasmicSequence analysis1
Transmembranei352 – 372HelicalSequence analysisAdd BLAST21
Topological domaini373 – 380LumenalSequence analysis8
Transmembranei381 – 401HelicalSequence analysisAdd BLAST21
Topological domaini402 – 479CytoplasmicSequence analysisAdd BLAST78
Transmembranei480 – 500HelicalSequence analysisAdd BLAST21
Topological domaini501 – 562LumenalSequence analysisAdd BLAST62

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Golgi apparatus, Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003394121 – 562LIMR family protein C622.11Add BLAST562

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		O94599

PRoteomics IDEntifications database

More...PRIDEi		O94599

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		O94599

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...BioGRIDi		275393, 1 interactor

STRING: functional protein association networks

More...STRINGi		4896.SPCC622.11.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the LIMR family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG2296, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_546474_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		O94599

Identification of Orthologs from Complete Genome Data

More...OMAi		IPNGRSN

Database for complete collections of gene phylogenies

More...PhylomeDBi		O94599

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR006876, LMBR1-like_membr_prot

Pfam protein domain database

More...Pfami		View protein in Pfam
PF04791, LMBR1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

O94599-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSSWFNVGIL CLLRFKNVQD NKIIFEAIFE VFLHFLKIPV YMTHLGFPIT 
        60         70         80         90        100
PTVCLIEMLG LLLLLLIPAL FTLIWIYKYI EPHSLISIPG IFVFLGLYVP 
       110        120        130        140        150
FVVTLLIPID VTWDVSLSIW RFLYWLTFVL SWIILPFVQG YMESKFSTPR 
       160        170        180        190        200
SRLSDSFYKN LRYYLLLTFL TCVVIAYLRF ALRTMSFSNF KELVISLTYF 
       210        220        230        240        250
WGLLFVIFLL GNGFVYVPVS MWKKAFITKR AALLERQAVG VYSKLQARLE 
       260        270        280        290        300
SYSLPSSSIS LNNGRNQSSS DFFTSSLTDH AFNPHSSPNG MSNVIALQTT 
       310        320        330        340        350
WNQMVKEYNR IMLIKTAKAS GSYRLYLPDS YIPIHPVVAY AFYVWILPAF 
       360        370        380        390        400
RILFSIFMAS MSVIIVVSEV FLHTQYSLVG IILQKFTNSS ATSIFVSFLF 
       410        420        430        440        450
VYYMRYCTYK SLMRTQFAPH YYYALVPFRA TNTASLIYFA SQLCRLTLPL 
       460        470        480        490        500
CYNFVSLQPY PTQFHQFYGE SIDLLPLGNL ISKRYPTFIL LPIIFSMISL 
       510        520        530        540        550
KYRLRQFIYS ITLRKSSSAS SSDDFDDSSL NSENDDDLFN ETSAAYLAEG 
       560 
RALLLGTNNA HV
Length:562
Mass (Da):64,826
Last modified:May 1, 1999 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i2C9FCAD13AF88978
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CU329672 Genomic DNA Translation: CAA21867.1

Protein sequence database of the Protein Information Resource

More...PIRi		T41491

NCBI Reference Sequences

More...RefSeqi		NP_588183.1, NM_001023173.2

Genome annotation databases

Ensembl fungal genome annotation project

More...EnsemblFungii		SPCC622.11.1; SPCC622.11.1:pep; SPCC622.11

Database of genes from NCBI RefSeq genomes

More...GeneIDi		2538812

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		spo:SPCC622.11

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329672 Genomic DNA Translation: CAA21867.1
PIRiT41491
RefSeqiNP_588183.1, NM_001023173.2

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

BioGRIDi275393, 1 interactor
STRINGi4896.SPCC622.11.1

PTM databases

iPTMnetiO94599

Proteomic databases

PaxDbiO94599
PRIDEiO94599

Genome annotation databases

EnsemblFungiiSPCC622.11.1; SPCC622.11.1:pep; SPCC622.11
GeneIDi2538812
KEGGispo:SPCC622.11

Organism-specific databases

PomBaseiSPCC622.11
VEuPathDBiFungiDB:SPCC622.11

Phylogenomic databases

eggNOGiKOG2296, Eukaryota
HOGENOMiCLU_546474_0_0_1
InParanoidiO94599
OMAiIPNGRSN
PhylomeDBiO94599

Miscellaneous databases

Protein Ontology

More...PROi		PR:O94599

Family and domain databases

InterProiView protein in InterPro
IPR006876, LMBR1-like_membr_prot
PfamiView protein in Pfam
PF04791, LMBR1, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiYC8B_SCHPO
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: O94599
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 10, 2008
Last sequence update: May 1, 1999
Last modified: September 29, 2021
This is version 97 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
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