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Entry version 108 (11 Dec 2019)
Sequence version 1 (01 Nov 1998)
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Protein

Scarecrow-like protein 6

Gene

SCL6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Probable transcription factor involved in plant development.By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processTranscription, Transcription regulation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Scarecrow-like protein 6
Short name:
AtSCL6
Alternative name(s):
GRAS family protein 22
Short name:
AtGRAS-22
SCL6-IV
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:SCL6
Ordered Locus Names:At4g00150
ORF Names:F6N15.20
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 4

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT4G00150

The Arabidopsis Information Resource

More...
TAIRi
locus:2126901 AT4G00150

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003508501 – 558Scarecrow-like protein 6Add BLAST558

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
O81316

PRoteomics IDEntifications database

More...
PRIDEi
O81316

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in seedlings, roots, leaves, flowers and siliques.2 Publications

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
O81316 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
O81316 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with Meloidogyne incognita 16D10.

1 Publication

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

Show more details

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
13497, 17 interactors

Protein interaction database and analysis system

More...
IntActi
O81316, 18 interactors

STRING: functional protein association networks

More...
STRINGi
3702.AT4G00150.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
O81316

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini196 – 554GRASPROSITE-ProRule annotationAdd BLAST359

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni203 – 257Leucine repeat I (LRI)PROSITE-ProRule annotationAdd BLAST55
Regioni276 – 340VHIIDPROSITE-ProRule annotationAdd BLAST65
Regioni356 – 388Leucine repeat II (LRII)PROSITE-ProRule annotationAdd BLAST33
Regioni396 – 479PFYREPROSITE-ProRule annotationAdd BLAST84
Regioni482 – 554SAWPROSITE-ProRule annotationAdd BLAST73

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a short (usually not more than 20 amino acids) conserved sequence motif of biological significance.<p><a href='/help/motif' target='_top'>More...</a></p>Motifi307 – 311VHIIDPROSITE-ProRule annotation5

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi41 – 46Poly-Glu6

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the GRAS family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410II7A Eukaryota
ENOG410YANM LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000239326

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
O81316

Identification of Orthologs from Complete Genome Data

More...
OMAi
QWASLMH

Database of Orthologous Groups

More...
OrthoDBi
420029at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
O81316

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR005202 TF_GRAS

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF03514 GRAS, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50985 GRAS, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

O81316-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA
60 70 80 90 100
EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
110 120 130 140 150
QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT
160 170 180 190 200
GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
210 220 230 240 250
GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK
260 270 280 290 300
EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
310 320 330 340 350
FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD
360 370 380 390 400
QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
410 420 430 440 450
SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA
460 470 480 490 500
LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
510 520 530 540 550
QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV

SAWRCRSS
Length:558
Mass (Da):61,168
Last modified:November 1, 1998 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iFA07D1A11B053910
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF069299 Genomic DNA Translation: AAC19296.1
AL161471 Genomic DNA Translation: CAB80773.1
CP002687 Genomic DNA Translation: AEE81829.1
AF462831 mRNA Translation: AAL58919.1
AY133537 mRNA Translation: AAM91367.1
AF036303 mRNA Translation: AAD24406.1
EU550755 Genomic DNA Translation: ACB31517.1
EU550756 Genomic DNA Translation: ACB31518.1
EU550757 Genomic DNA Translation: ACB31519.1
EU550758 Genomic DNA Translation: ACB31520.1
EU550759 Genomic DNA Translation: ACB31521.1
EU550760 Genomic DNA Translation: ACB31522.1
EU550761 Genomic DNA Translation: ACB31523.1
EU550762 Genomic DNA Translation: ACB31524.1
EU550763 Genomic DNA Translation: ACB31525.1
EU550764 Genomic DNA Translation: ACB31526.1
EU550765 Genomic DNA Translation: ACB31527.1
EU550766 Genomic DNA Translation: ACB31528.1
EU550767 Genomic DNA Translation: ACB31529.1
EU550768 Genomic DNA Translation: ACB31530.1
EU550769 Genomic DNA Translation: ACB31531.1
EU550770 Genomic DNA Translation: ACB31532.1
EU550771 Genomic DNA Translation: ACB31533.1
EU550772 Genomic DNA Translation: ACB31534.1
EU550773 Genomic DNA Translation: ACB31535.1
EU550774 Genomic DNA Translation: ACB31536.1
EU550775 Genomic DNA Translation: ACB31537.1
EU550776 Genomic DNA Translation: ACB31538.1
EU550777 Genomic DNA Translation: ACB31539.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T01343
T51237

NCBI Reference Sequences

More...
RefSeqi
NP_191926.1, NM_116232.5

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT4G00150.1; AT4G00150.1; AT4G00150

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
828208

Gramene; a comparative resource for plants

More...
Gramenei
AT4G00150.1; AT4G00150.1; AT4G00150

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT4G00150

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF069299 Genomic DNA Translation: AAC19296.1
AL161471 Genomic DNA Translation: CAB80773.1
CP002687 Genomic DNA Translation: AEE81829.1
AF462831 mRNA Translation: AAL58919.1
AY133537 mRNA Translation: AAM91367.1
AF036303 mRNA Translation: AAD24406.1
EU550755 Genomic DNA Translation: ACB31517.1
EU550756 Genomic DNA Translation: ACB31518.1
EU550757 Genomic DNA Translation: ACB31519.1
EU550758 Genomic DNA Translation: ACB31520.1
EU550759 Genomic DNA Translation: ACB31521.1
EU550760 Genomic DNA Translation: ACB31522.1
EU550761 Genomic DNA Translation: ACB31523.1
EU550762 Genomic DNA Translation: ACB31524.1
EU550763 Genomic DNA Translation: ACB31525.1
EU550764 Genomic DNA Translation: ACB31526.1
EU550765 Genomic DNA Translation: ACB31527.1
EU550766 Genomic DNA Translation: ACB31528.1
EU550767 Genomic DNA Translation: ACB31529.1
EU550768 Genomic DNA Translation: ACB31530.1
EU550769 Genomic DNA Translation: ACB31531.1
EU550770 Genomic DNA Translation: ACB31532.1
EU550771 Genomic DNA Translation: ACB31533.1
EU550772 Genomic DNA Translation: ACB31534.1
EU550773 Genomic DNA Translation: ACB31535.1
EU550774 Genomic DNA Translation: ACB31536.1
EU550775 Genomic DNA Translation: ACB31537.1
EU550776 Genomic DNA Translation: ACB31538.1
EU550777 Genomic DNA Translation: ACB31539.1
PIRiT01343
T51237
RefSeqiNP_191926.1, NM_116232.5

3D structure databases

SMRiO81316
ModBaseiSearch...

Protein-protein interaction databases

BioGridi13497, 17 interactors
IntActiO81316, 18 interactors
STRINGi3702.AT4G00150.1

Proteomic databases

PaxDbiO81316
PRIDEiO81316

Genome annotation databases

EnsemblPlantsiAT4G00150.1; AT4G00150.1; AT4G00150
GeneIDi828208
GrameneiAT4G00150.1; AT4G00150.1; AT4G00150
KEGGiath:AT4G00150

Organism-specific databases

AraportiAT4G00150
TAIRilocus:2126901 AT4G00150

Phylogenomic databases

eggNOGiENOG410II7A Eukaryota
ENOG410YANM LUCA
HOGENOMiHOG000239326
InParanoidiO81316
OMAiQWASLMH
OrthoDBi420029at2759
PhylomeDBiO81316

Miscellaneous databases

Protein Ontology

More...
PROi
PR:O81316

Gene expression databases

ExpressionAtlasiO81316 baseline and differential
GenevisibleiO81316 AT

Family and domain databases

InterProiView protein in InterPro
IPR005202 TF_GRAS
PfamiView protein in Pfam
PF03514 GRAS, 1 hit
PROSITEiView protein in PROSITE
PS50985 GRAS, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiSCL6_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: O81316
Secondary accession number(s): B2CV54, Q9SYQ4
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 23, 2008
Last sequence update: November 1, 1998
Last modified: December 11, 2019
This is version 108 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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