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Protein

Polygalacturonase 1 beta-like protein 2

Gene

PGL2

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Involved in cell size determination.By similarity

Names & Taxonomyi

Protein namesi
Recommended name:
Polygalacturonase 1 beta-like protein 21 Publication
Short name:
AtPGL21 Publication
Alternative name(s):
Aromatic-rich glycoprotein At1g60390
PG1beta-like protein 21 Publication
Polygalacturonase 11 Publication
Probable polygalacturonase non-catalytic subunit At1g60390
Gene namesi
Name:PGL21 Publication
Synonyms:PG11 Publication
Ordered Locus Names:At1g60390Imported
ORF Names:T13D8.26Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G60390
TAIRilocus:2195593 AT1G60390

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Apoplast, Cell wall, Secreted

Pathology & Biotechi

Disruption phenotypei

No visible phenotype. Atpgl1, atpgl2 and atpgl3 triple mutants produce smaller leaves and petioles.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 26Sequence analysisAdd BLAST26
ChainiPRO_000004295727 – 624Polygalacturonase 1 beta-like protein 2Add BLAST598

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi128N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi145N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi280N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi352N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi364N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi392N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi463N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiO80760

Expressioni

Tissue specificityi

Expressed in flowers and stems.1 Publication

Developmental stagei

Barely detectable in 6 days after-germination (DAG) seedlings, but highly expressed in 14 DAG seedlings.1 Publication

Gene expression databases

ExpressionAtlasiO80760 baseline and differential
GenevisibleiO80760 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G60390.1

Structurei

3D structure databases

ProteinModelPortaliO80760
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati121 – 124FXXY 1Curated4
Repeati129 – 132FXXY 2Curated4
Repeati143 – 146FXXY 3Curated4
Repeati157 – 160FXXY 4Curated4
Repeati171 – 174FXXY 5Curated4
Repeati185 – 188FXXY 6Curated4
Repeati199 – 202FXXY 7Curated4
Repeati213 – 216FXXY 8Curated4
Repeati227 – 230FXXY 9Curated4
Repeati241 – 244FXXY 10Curated4
Repeati255 – 258FXXY 11Curated4
Repeati269 – 272FXXY 12Curated4
Repeati283 – 286FXXY 13Curated4
Repeati297 – 300FXXY 14Curated4
Repeati311 – 314FXXY 15Curated4
Repeati325 – 328FXXY 16Curated4
Repeati339 – 342FXXY 17Curated4
Repeati353 – 356FXXY 18Curated4
Repeati367 – 370FXXY 19Curated4
Repeati376 – 379FXXY 20Curated4
Repeati386 – 389FXXY 21Curated4
Domaini409 – 623BURPPROSITE-ProRule annotationAdd BLAST215

Domaini

The BURP domain located at the C-terminus has not been identified in non-plant proteins.1 Publication

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

eggNOGiENOG410IK7R Eukaryota
ENOG410YDAC LUCA
HOGENOMiHOG000082581
InParanoidiO80760
OMAiANEPNGR
OrthoDBiEOG09360493
PhylomeDBiO80760

Family and domain databases

InterProiView protein in InterPro
IPR004873 BURP_dom
PfamiView protein in Pfam
PF03181 BURP, 1 hit
SMARTiView protein in SMART
SM01045 BURP, 1 hit
PROSITEiView protein in PROSITE
PS51277 BURP, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O80760-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNNIEATLFL CFFCIFSSSN VHFAGAKQTA GNITPSENPF TPKASLIRYW
60 70 80 90 100
NNHINGDSPK PSFFLSKASP LTAVDSTRFA SLASNHALNT HHSDFCSAAK
110 120 130 140 150
LFCFPELAAH SLEKHGDDVN FAAYSGKNFT NYGSDRLSGA DSFKNYSGGD
160 170 180 190 200
NIAVDSFRRY SRNSAGHDDG FTNYAGEVNV ADQSFTTYAT GTTGGSGEFT
210 220 230 240 250
NYNTDANEPN GRFTSYSDKA NGRSQTFTTY SENGNTGYQS FTSYSKNGNG
260 270 280 290 300
APNEFSGYGT GSNVVNTGFT KYGESANGAN DSFTSYGENG NVPVNEFKGY
310 320 330 340 350
GDGGNGAVYG FKNYRDQSNI GVDSFSSYAK NSNNEKVNFV NYGKSFNLGS
360 370 380 390 400
DNFTGYGQDN VGGNVSFKTY GQGQSFKVYT KDGVVFARYS NNVSSNGKTV
410 420 430 440 450
NKWVEEGKFF REAMLKEGTL MQMPDIKDKM PKRTFLPRNI VKNLPFSSST
460 470 480 490 500
IGEIWRVFGA GENSSMAGII SSAVSECERP ASHGETKRCV GSAEDMIDFA
510 520 530 540 550
TSVLGRGVVV RTTENVVGSK KKVVIGKVNG INGGDVTRAV SCHQSLYPYL
560 570 580 590 600
LYYCHSVPRV RVYETDLLDP KSLEKINHGV AICHIDTSAW SPSHGAFLAL
610 620
GSGPGQIEVC HWIFENDMTW NIID
Length:624
Mass (Da):67,762
Last modified:November 1, 1998 - v1
Checksum:i4CAAD8858A374F08
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004473 Genomic DNA Translation: AAC24065.1
CP002684 Genomic DNA Translation: AEE33681.1
AK227564 mRNA Translation: BAE99558.1
PIRiT02289
RefSeqiNP_176242.1, NM_104726.3
UniGeneiAt.36663

Genome annotation databases

EnsemblPlantsiAT1G60390.1; AT1G60390.1; AT1G60390
GeneIDi842334
GrameneiAT1G60390.1; AT1G60390.1; AT1G60390
KEGGiath:AT1G60390

Similar proteinsi

Entry informationi

Entry nameiPGL2_ARATH
AccessioniPrimary (citable) accession number: O80760
Secondary accession number(s): Q0WTJ0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: November 1, 1998
Last modified: April 25, 2018
This is version 92 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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