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UniProtKB - O75436 (VP26A_HUMAN)

Protein

Vacuolar protein sorting-associated protein 26A

Gene

VPS26A

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway. The recruitment of the CSC to the endosomal membrane involves RAB7A and SNX3. The SNX-BAR retromer mediates retrograde transport of cargo proteins from endosomes to the trans-Golgi network (TGN) and is involved in endosome-to-plasma membrane transport for cargo protein recycling. The SNX3-retromer mediates the retrograde endosome-to-TGN transport of WLS distinct from the SNX-BAR retromer pathway. The SNX27-retromer is believed to be involved in endosome-to-plasma membrane trafficking and recycling of a broad spectrum of cargo proteins (Probable). The CSC seems to act as recruitment hub for other proteins, such as the WASH complex and TBC1D5 (Probable). Required for retrograde transport of lysosomal enzyme receptor IGF2R (PubMed:15078902, PubMed:15078903). Required to regulate transcytosis of the polymeric immunoglobulin receptor (pIgR-pIgA) (PubMed:15247922). Required for the endosomal localization of WASHC2A (indicative for the WASH complex) (PubMed:22070227). Required for the endosomal localization of TBC1D5 (PubMed:20923837). Mediates retromer cargo recognition of SORL1 and is involved in trafficking of SORL1 implicated in sorting and processing of APP (PubMed:22279231). Involved in retromer-independent lysosomal sorting of F2R (PubMed:16407403). Involved in recycling of ADRB2 (PubMed:21602791). Enhances the affinity of SNX27 for PDZ-binding motifs in cargo proteins (By similarity).4 PublicationsBy similarityCurated6 Publications

GO - Molecular functioni

View the complete GO annotation on QuickGO ...

GO - Biological processi

  • intracellular protein transport Source: GO_Central
  • regulation of macroautophagy Source: ParkinsonsUK-UCL
  • retrograde transport, endosome to Golgi Source: UniProtKB
  • retrograde transport, endosome to plasma membrane Source: UniProtKB
  • Wnt signaling pathway Source: Reactome
View the complete GO annotation on QuickGO ...

Keywordsi

Biological processProtein transport, Transport

Enzyme and pathway databases

ReactomeiR-HSA-3238698 WNT ligand biogenesis and trafficking

Names & Taxonomyi

Protein namesi
Recommended name:
Vacuolar protein sorting-associated protein 26A
Alternative name(s):
Vesicle protein sorting 26A
Short name:
hVPS26
Gene namesi
Name:VPS26A
Synonyms:VPS26
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo
Proteomesi
  • UP000005640 Componenti: Chromosome 10

Organism-specific databases

EuPathDBiHostDB:ENSG00000122958.14
HGNCiHGNC:12711 VPS26A
MIMi605506 gene
neXtProtiNX_O75436

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Endosome, Membrane

Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Mutagenesisi235 – 236IM → DD: Abolishes interaction with VPS35 and endosomal subcellular location. 2

Organism-specific databases

DisGeNETi9559
OpenTargetsiENSG00000122958
PharmGKBiPA37326

Polymorphism and mutation databases

BioMutaiVPS26A

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000730071 – 327Vacuolar protein sorting-associated protein 26AAdd BLAST327

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei315PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

EPDiO75436
MaxQBiO75436
PaxDbiO75436
PeptideAtlasiO75436
PRIDEiO75436
ProteomicsDBi50002

PTM databases

iPTMnetiO75436
PhosphoSitePlusiO75436
SwissPalmiO75436

Expressioni

Inductioni

Down-regulated in Alzheimer disease. No polymorphism or variant is however associated with Alzheimer disease for VPS26A.2 Publications

Gene expression databases

BgeeiENSG00000122958 Expressed in 235 organ(s), highest expression level in visceral pleura
CleanExiHS_VPS26A
ExpressionAtlasiO75436 baseline and differential
GenevisibleiO75436 HS

Organism-specific databases

HPAiCAB011602
CAB075733
HPA057498

Interactioni

Subunit structurei

Component of the heterotrimeric retromer cargo-selective complex (CSC), also descibed as vacuolar protein sorting subcomplex (VPS), formed by VPS26 (VPS26A or VPS26B), VPS29 and VPS35 (PubMed:11102511). The CSC has a highly elongated structure with VPS26 and VPS29 binding independently at opposite distal ends of VPS35 as central platform (By similarity). The CSC is believed to associate with variable sorting nexins to form functionally distinct retromer complex variants. The originally described retromer complex (also called SNX-BAR retromer) is a pentamer containing the CSC and a heterodimeric membrane-deforming subcomplex formed between SNX1 or SNX2 and SNX5 or SNX6 (also called SNX-BAR subcomplex); the respective CSC and SNX-BAR subcomplexes associate with low affinity. The CSC associates with SNX3 to form a SNX3-retromer complex. The CSC associates with SNX27, the WASH complex and the SNX-BAR subcomplex to form the SNX27-retromer complex (Probable). Interacts with VPS29, VPS35, SNX1, SNX2, SNX5, SNX6, SNX3, SNX27, RAB7A, ECPAS, EHD1, WASHC5, SORL1 (PubMed:11102511, PubMed:16190980, PubMed:19619496, PubMed:17868075, PubMed:19531583, PubMed:20682791, PubMed:20923837, PubMed:21725319, PubMed:22279231, PubMed:24344282, PubMed:16732284).3 PublicationsBy similarity11 Publications

Binary interactionsi

Protein-protein interaction databases

BioGridi114930, 108 interactors
CORUMiO75436
DIPiDIP-29075N
IntActiO75436, 47 interactors
MINTiO75436
STRINGi9606.ENSP00000263559

Structurei

Secondary structure

1327
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

ProteinModelPortaliO75436
SMRiO75436
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiO75436

Family & Domainsi

Sequence similaritiesi

Belongs to the VPS26 family.Curated

Phylogenomic databases

eggNOGiKOG3063 Eukaryota
ENOG410XSI1 LUCA
GeneTreeiENSGT00390000002588
HOGENOMiHOG000191799
HOVERGENiHBG082914
InParanoidiO75436
KOiK18466
OMAiPVCEIDV
OrthoDBiEOG091G09TQ
PhylomeDBiO75436
TreeFamiTF300907

Family and domain databases

Gene3Di2.60.40.640, 2 hits
InterProiView protein in InterPro
IPR014752 Arrestin_C
IPR028934 Vps26-related
PANTHERiPTHR12233 PTHR12233, 1 hit
PfamiView protein in Pfam
PF03643 Vps26, 1 hit

Sequences (2+)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 2 described isoforms and 2 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: O75436-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MSFLGGFFGP ICEIDIVLND GETRKMAEMK TEDGKVEKHY LFYDGESVSG 
        60         70         80         90        100
KVNLAFKQPG KRLEHQGIRI EFVGQIELFN DKSNTHEFVN LVKELALPGE 
       110        120        130        140        150
LTQSRSYDFE FMQVEKPYES YIGANVRLRY FLKVTIVRRL TDLVKEYDLI 
       160        170        180        190        200
VHQLATYPDV NNSIKMEVGI EDCLHIEFEY NKSKYHLKDV IVGKIYFLLV 
       210        220        230        240        250
RIKIQHMELQ LIKKEITGIG PSTTTETETI AKYEIMDGAP VKGESIPIRL 
       260        270        280        290        300
FLAGYDPTPT MRDVNKKFSV RYFLNLVLVD EEDRRYFKQQ EIILWRKAPE 
       310        320 
KLRKQRTNFH QRFESPESQA SAEQPEM
Length:327
Mass (Da):38,170
Last modified:November 25, 2002 - v2
Checksum:iBD3B2EAA6CFCBFA9
GO
Isoform 2 (identifier: O75436-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     243-327: GESIPIRLFL...SQASAEQPEM → GDNFMEKSS

Note: No experimental confirmation available.Curated
Show »
Length:251
Mass (Da):28,938
Checksum:i1140DC4C2D80D257
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
S4R3Q6S4R3Q6_HUMAN
Vacuolar protein sorting-associated...
VPS26A
226Annotation score:
S4R2Y3S4R2Y3_HUMAN
Vacuolar protein sorting-associated...
VPS26A
63Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti75Q → R in BAB14351 (PubMed:14702039).Curated1
Sequence conflicti242K → Q in BQ048905 (PubMed:15489334).Curated1
Sequence conflicti285 – 286RY → SS in AAF89954 (PubMed:11102511).Curated2
Sequence conflicti285 – 286RY → SS in AAC39912 (PubMed:9653160).Curated2
Isoform 2 (identifier: O75436-2)
Sequence conflicti243G → R in BQ048905 (PubMed:15489334).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_044910243 – 327GESIP…EQPEM → GDNFMEKSS in isoform 2. 1 PublicationAdd BLAST85

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF175266 mRNA Translation: AAF89954.1
AF054179 mRNA Translation: AAC39912.1
AK022992 mRNA Translation: BAB14351.1
AK315496 mRNA Translation: BAG37880.1
AL596223 Genomic DNA No translation available.
AL442635 Genomic DNA No translation available.
CH471083 Genomic DNA Translation: EAW54313.1
BC022505 mRNA Translation: AAH22505.1
BQ048905 mRNA No translation available.
CCDSiCCDS41536.1 [O75436-2]
CCDS7286.1 [O75436-1]
RefSeqiNP_001030337.1, NM_001035260.2 [O75436-2]
NP_001305875.1, NM_001318946.1
NP_004887.2, NM_004896.4 [O75436-1]
UniGeneiHs.499925

Genome annotation databases

EnsembliENST00000263559; ENSP00000263559; ENSG00000122958 [O75436-1]
ENST00000373382; ENSP00000362480; ENSG00000122958 [O75436-1]
ENST00000395098; ENSP00000378532; ENSG00000122958 [O75436-2]
GeneIDi9559
KEGGihsa:9559
UCSCiuc001jpb.4 human [O75436-1]

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF175266 mRNA Translation: AAF89954.1
AF054179 mRNA Translation: AAC39912.1
AK022992 mRNA Translation: BAB14351.1
AK315496 mRNA Translation: BAG37880.1
AL596223 Genomic DNA No translation available.
AL442635 Genomic DNA No translation available.
CH471083 Genomic DNA Translation: EAW54313.1
BC022505 mRNA Translation: AAH22505.1
BQ048905 mRNA No translation available.
CCDSiCCDS41536.1 [O75436-2]
CCDS7286.1 [O75436-1]
RefSeqiNP_001030337.1, NM_001035260.2 [O75436-2]
NP_001305875.1, NM_001318946.1
NP_004887.2, NM_004896.4 [O75436-1]
UniGeneiHs.499925

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2FAUX-ray2.10A1-327[»]
5F0JX-ray2.70B2-326[»]
5F0LX-ray3.20B1-317[»]
5F0MX-ray3.10B1-321[»]
5F0PX-ray2.78B1-321[»]
ProteinModelPortaliO75436
SMRiO75436
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi114930, 108 interactors
CORUMiO75436
DIPiDIP-29075N
IntActiO75436, 47 interactors
MINTiO75436
STRINGi9606.ENSP00000263559

PTM databases

iPTMnetiO75436
PhosphoSitePlusiO75436
SwissPalmiO75436

Polymorphism and mutation databases

BioMutaiVPS26A

Proteomic databases

EPDiO75436
MaxQBiO75436
PaxDbiO75436
PeptideAtlasiO75436
PRIDEiO75436
ProteomicsDBi50002

Protocols and materials databases

DNASUi9559
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000263559; ENSP00000263559; ENSG00000122958 [O75436-1]
ENST00000373382; ENSP00000362480; ENSG00000122958 [O75436-1]
ENST00000395098; ENSP00000378532; ENSG00000122958 [O75436-2]
GeneIDi9559
KEGGihsa:9559
UCSCiuc001jpb.4 human [O75436-1]

Organism-specific databases

CTDi9559
DisGeNETi9559
EuPathDBiHostDB:ENSG00000122958.14
GeneCardsiVPS26A
HGNCiHGNC:12711 VPS26A
HPAiCAB011602
CAB075733
HPA057498
MIMi605506 gene
neXtProtiNX_O75436
OpenTargetsiENSG00000122958
PharmGKBiPA37326
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG3063 Eukaryota
ENOG410XSI1 LUCA
GeneTreeiENSGT00390000002588
HOGENOMiHOG000191799
HOVERGENiHBG082914
InParanoidiO75436
KOiK18466
OMAiPVCEIDV
OrthoDBiEOG091G09TQ
PhylomeDBiO75436
TreeFamiTF300907

Enzyme and pathway databases

ReactomeiR-HSA-3238698 WNT ligand biogenesis and trafficking

Miscellaneous databases

ChiTaRSiVPS26A human
EvolutionaryTraceiO75436
GeneWikiiVPS26A
GenomeRNAii9559
PROiPR:O75436
SOURCEiSearch...

Gene expression databases

BgeeiENSG00000122958 Expressed in 235 organ(s), highest expression level in visceral pleura
CleanExiHS_VPS26A
ExpressionAtlasiO75436 baseline and differential
GenevisibleiO75436 HS

Family and domain databases

Gene3Di2.60.40.640, 2 hits
InterProiView protein in InterPro
IPR014752 Arrestin_C
IPR028934 Vps26-related
PANTHERiPTHR12233 PTHR12233, 1 hit
PfamiView protein in Pfam
PF03643 Vps26, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiVP26A_HUMAN
AccessioniPrimary (citable) accession number: O75436
Secondary accession number(s): A8MZ56
, B2RDD3, Q8TBH4, Q9H982
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 21, 2001
Last sequence update: November 25, 2002
Last modified: September 12, 2018
This is version 164 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. Human chromosome 10
    Human chromosome 10: entries, gene names and cross-references to MIM
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
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