UniProtKB - O75306 (NDUS2_HUMAN)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial
NDUFS2
Functioni
Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) which catalyzes electron transfer from NADH through the respiratory chain, using ubiquinone as an electron acceptor (PubMed:30922174, PubMed:22036843).
Essential for the catalytic activity of complex I (PubMed:30922174, PubMed:22036843).
Essential for the assembly of complex I (By similarity).
Redox-sensitive, critical component of the oxygen-sensing pathway in the pulmonary vasculature which plays a key role in acute pulmonary oxygen-sensing and hypoxic pulmonary vasoconstriction (PubMed:30922174).
Plays an important role in carotid body sensing of hypoxia (By similarity).
Essential for glia-like neural stem and progenitor cell proliferation, differentiation and subsequent oligodendrocyte or neuronal maturation (By similarity).
By similarity2 PublicationsCatalytic activityi
- EC:7.1.1.22 Publications
Cofactori
Kineticsi
- KM=10.2 µM for decylubiquinone1 Publication
- KM=55 µM for ubiquinone-11 Publication
Sites
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Metal bindingi | 326 | Iron-sulfur (4Fe-4S)Sequence analysis | 1 | |
Metal bindingi | 332 | Iron-sulfur (4Fe-4S)Sequence analysis | 1 | |
Metal bindingi | 347 | Iron-sulfur (4Fe-4S)Sequence analysis | 1 |
GO - Molecular functioni
- 4 iron, 4 sulfur cluster binding Source: UniProtKB-KW
- electron transfer activity Source: UniProtKB
- metal ion binding Source: UniProtKB-KW
- NAD binding Source: InterPro
- NADH dehydrogenase (ubiquinone) activity Source: UniProtKB
- oxygen sensor activity Source: UniProtKB
- quinone binding Source: InterPro
- ubiquitin protein ligase binding Source: ParkinsonsUK-UCL
GO - Biological processi
- cellular response to oxygen levels Source: UniProtKB
- gliogenesis Source: UniProtKB
- mitochondrial ATP synthesis coupled electron transport Source: CAFA
- mitochondrial electron transport, NADH to ubiquinone Source: UniProtKB
- mitochondrial respiratory chain complex I assembly Source: UniProtKB
- neural precursor cell proliferation Source: UniProtKB
- neurogenesis Source: UniProtKB
- response to oxidative stress Source: UniProtKB
Keywordsi
Molecular function | Oxidoreductase, Translocase |
Biological process | Electron transport, Respiratory chain, Transport |
Ligand | 4Fe-4S, Iron, Iron-sulfur, Metal-binding, NAD, Ubiquinone |
Enzyme and pathway databases
PathwayCommonsi | O75306 |
Reactomei | R-HSA-611105, Respiratory electron transport R-HSA-6799198, Complex I biogenesis |
SignaLinki | O75306 |
SIGNORi | O75306 |
Names & Taxonomyi
Protein namesi | Recommended name: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial (EC:7.1.1.22 Publications)Alternative name(s): Complex I-49kD Short name: CI-49kD NADH-ubiquinone oxidoreductase 49 kDa subunit |
Gene namesi | Name:NDUFS2 |
Organismi | Homo sapiens (Human) |
Taxonomic identifieri | 9606 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Proteomesi |
|
Organism-specific databases
HGNCi | HGNC:7708, NDUFS2 |
MIMi | 602985, gene |
neXtProti | NX_O75306 |
VEuPathDBi | HostDB:ENSG00000158864 |
Subcellular locationi
Mitochondrion
- Mitochondrion inner membrane 2 Publications; Peripheral membrane protein By similarity; Matrix side By similarity
Mitochondrion
- mitochondrial inner membrane Source: ComplexPortal
- mitochondrial matrix Source: Reactome
- mitochondrial respiratory chain complex I Source: UniProtKB
- mitochondrion Source: UniProtKB
Nucleus
- nucleoplasm Source: HPA
Keywords - Cellular componenti
Membrane, Mitochondrion, Mitochondrion inner membranePathology & Biotechi
Involvement in diseasei
Mitochondrial complex I deficiency, nuclear type 6 (MC1DN6)2 Publications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Natural variantiVAR_019535 | 228 | R → Q in MC1DN6. 1 PublicationCorresponds to variant dbSNP:rs121434427EnsemblClinVar. | 1 | |
Natural variantiVAR_019536 | 229 | P → Q in MC1DN6. 1 PublicationCorresponds to variant dbSNP:rs121434428EnsemblClinVar. | 1 | |
Natural variantiVAR_019537 | 413 | S → P in MC1DN6. 1 PublicationCorresponds to variant dbSNP:rs121434429EnsemblClinVar. | 1 | |
Natural variantiVAR_084193 | 446 | D → N in MC1DN6; loss of catalytic activity; no change in Km value for ubiquinone-1. 1 Publication | 1 |
Keywords - Diseasei
Disease variant, Primary mitochondrial diseaseOrganism-specific databases
DisGeNETi | 4720 |
MalaCardsi | NDUFS2 |
MIMi | 618228, phenotype |
OpenTargetsi | ENSG00000158864 |
Orphaneti | 2609, Isolated complex I deficiency 104, Leber hereditary optic neuropathy 70474, Leigh syndrome with cardiomyopathy 255241, Leigh syndrome with leukodystrophy |
PharmGKBi | PA31519 |
Miscellaneous databases
Pharosi | O75306, Tclin |
Chemistry databases
ChEMBLi | CHEMBL3039 |
DrugBanki | DB00997, Doxorubicin DB00157, NADH |
DrugCentrali | O75306 |
Genetic variation databases
BioMutai | NDUFS2 |
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Transit peptidei | 1 – 33 | MitochondrionBy similarityAdd BLAST | 33 | |
ChainiPRO_0000019981 | 34 – 463 | NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrialAdd BLAST | 430 |
Amino acid modifications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Modified residuei | 62 | N6-acetyllysineBy similarity | 1 | |
Modified residuei | 118 | Symmetric dimethylarginine2 Publications | 1 |
Post-translational modificationi
Keywords - PTMi
Acetylation, MethylationProteomic databases
EPDi | O75306 |
jPOSTi | O75306 |
MassIVEi | O75306 |
MaxQBi | O75306 |
PaxDbi | O75306 |
PeptideAtlasi | O75306 |
PRIDEi | O75306 |
ProteomicsDBi | 49883 [O75306-1] |
TopDownProteomicsi | O75306-1 [O75306-1] |
PTM databases
iPTMneti | O75306 |
PhosphoSitePlusi | O75306 |
SwissPalmi | O75306 |
Expressioni
Gene expression databases
Bgeei | ENSG00000158864, Expressed in right ovary and 241 other tissues |
Genevisiblei | O75306, HS |
Organism-specific databases
HPAi | ENSG00000158864, Tissue enhanced (skeletal muscle, tongue) |
Interactioni
Subunit structurei
Core subunit of respiratory chain NADH dehydrogenase (Complex I) which is composed of 45 different subunits.
Component of the iron-sulfur (IP) fragment of the enzyme (PubMed:12611891).
Interacts with NDUFAF3 (PubMed:19463981).
Interacts with NDUFAF7 (PubMed:20406883, PubMed:24089531).
Interacts with CERS2 (By similarity).
By similarity4 PublicationsBinary interactionsi
GO - Molecular functioni
- ubiquitin protein ligase binding Source: ParkinsonsUK-UCL
Protein-protein interaction databases
BioGRIDi | 110800, 251 interactors |
ComplexPortali | CPX-577, Mitochondrial respiratory chain complex I |
CORUMi | O75306 |
IntActi | O75306, 84 interactors |
MINTi | O75306 |
STRINGi | 9606.ENSP00000356972 |
Chemistry databases
BindingDBi | O75306 |
Miscellaneous databases
RNActi | O75306, protein |
Structurei
Secondary structure
3D structure databases
SMRi | O75306 |
ModBasei | Search... |
PDBe-KBi | Search... |
Family & Domainsi
Sequence similaritiesi
Keywords - Domaini
Transit peptidePhylogenomic databases
eggNOGi | KOG2870, Eukaryota |
GeneTreei | ENSGT00390000009529 |
HOGENOMi | CLU_015134_1_1_1 |
InParanoidi | O75306 |
OMAi | IMGTSME |
OrthoDBi | 444312at2759 |
PhylomeDBi | O75306 |
TreeFami | TF300370 |
Family and domain databases
Gene3Di | 1.10.645.10, 1 hit |
HAMAPi | MF_01358, NDH1_NuoD, 1 hit |
InterProi | View protein in InterPro IPR001135, NADH_Q_OxRdtase_suD IPR014029, NADH_UbQ_OxRdtase_49kDa_CS IPR022885, NDH1_su_D/H IPR029014, NiFe-Hase_large |
PANTHERi | PTHR11993, PTHR11993, 1 hit |
Pfami | View protein in Pfam PF00346, Complex1_49kDa, 1 hit |
SUPFAMi | SSF56762, SSF56762, 1 hit |
TIGRFAMsi | TIGR01962, NuoD, 1 hit |
PROSITEi | View protein in PROSITE PS00535, COMPLEX1_49K, 1 hit |
s (2+)i Sequence
Sequence statusi: Complete.
: The displayed sequence is further processed into a mature form. Sequence processingi
This entry describes 2 produced by isoformsialternative splicing. AlignAdd to basketThis entry has 2 described isoforms and 17 potential isoforms that are computationally mapped.Show allAlign All
This isoform has been chosen as the sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. canonicali
10 20 30 40 50
MAALRALCGF RGVAAQVLRP GAGVRLPIQP SRGVRQWQPD VEWAQQFGGA
60 70 80 90 100
VMYPSKETAH WKPPPWNDVD PPKDTIVKNI TLNFGPQHPA AHGVLRLVME
110 120 130 140 150
LSGEMVRKCD PHIGLLHRGT EKLIEYKTYL QALPYFDRLD YVSMMCNEQA
160 170 180 190 200
YSLAVEKLLN IRPPPRAQWI RVLFGEITRL LNHIMAVTTH ALDLGAMTPF
210 220 230 240 250
FWLFEEREKM FEFYERVSGA RMHAAYIRPG GVHQDLPLGL MDDIYQFSKN
260 270 280 290 300
FSLRLDELEE LLTNNRIWRN RTIDIGVVTA EEALNYGFSG VMLRGSGIQW
310 320 330 340 350
DLRKTQPYDV YDQVEFDVPV GSRGDCYDRY LCRVEEMRQS LRIIAQCLNK
360 370 380 390 400
MPPGEIKVDD AKVSPPKRAE MKTSMESLIH HFKLYTEGYQ VPPGATYTAI
410 420 430 440 450
EAPKGEFGVY LVSDGSSRPY RCKIKAPGFA HLAGLDKMSK GHMLADVVAI
460
IGTQDIVFGE VDR
Computationally mapped potential isoform sequencesi
There are 17 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketA0A7I2V596 | A0A7I2V596_HUMAN | Complex I-49kD | NDUFS2 | 478 | Annotation score: | ||
A0A7I2V4G5 | A0A7I2V4G5_HUMAN | Complex I-49kD | NDUFS2 | 437 | Annotation score: | ||
A0A7I2V4X8 | A0A7I2V4X8_HUMAN | Complex I-49kD | NDUFS2 | 438 | Annotation score: | ||
A0A7I2YQD8 | A0A7I2YQD8_HUMAN | Complex I-49kD | NDUFS2 | 431 | Annotation score: | ||
A0A7I2YQG7 | A0A7I2YQG7_HUMAN | Complex I-49kD | NDUFS2 | 484 | Annotation score: | ||
A0A7I2V2B9 | A0A7I2V2B9_HUMAN | Complex I-49kD | NDUFS2 | 407 | Annotation score: | ||
A0A7I2V3J6 | A0A7I2V3J6_HUMAN | Complex I-49kD | NDUFS2 | 423 | Annotation score: | ||
A0A7I2V410 | A0A7I2V410_HUMAN | Complex I-49kD | NDUFS2 | 386 | Annotation score: | ||
A0A7I2V4W5 | A0A7I2V4W5_HUMAN | Complex I-49kD | NDUFS2 | 407 | Annotation score: | ||
A0A7I2V517 | A0A7I2V517_HUMAN | Complex I-49kD | NDUFS2 | 253 | Annotation score: | ||
There are more potential isoformsShow all |
Experimental Info
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Sequence conflicti | 24 | V → G in AAC34362 (PubMed:9585441).Curated | 1 |
Natural variant
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Natural variantiVAR_034150 | 20 | P → T. Corresponds to variant dbSNP:rs11538340EnsemblClinVar. | 1 | |
Natural variantiVAR_071891 | 224 | A → V1 Publication | 1 | |
Natural variantiVAR_019535 | 228 | R → Q in MC1DN6. 1 PublicationCorresponds to variant dbSNP:rs121434427EnsemblClinVar. | 1 | |
Natural variantiVAR_034151 | 229 | P → A. Corresponds to variant dbSNP:rs16827493Ensembl. | 1 | |
Natural variantiVAR_019536 | 229 | P → Q in MC1DN6. 1 PublicationCorresponds to variant dbSNP:rs121434428EnsemblClinVar. | 1 | |
Natural variantiVAR_034152 | 352 | P → A. Corresponds to variant dbSNP:rs11576415EnsemblClinVar. | 1 | |
Natural variantiVAR_019537 | 413 | S → P in MC1DN6. 1 PublicationCorresponds to variant dbSNP:rs121434429EnsemblClinVar. | 1 | |
Natural variantiVAR_084193 | 446 | D → N in MC1DN6; loss of catalytic activity; no change in Km value for ubiquinone-1. 1 Publication | 1 |
Alternative sequence
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Alternative sequenceiVSP_046466 | 454 – 463 | QDIVFGEVDR → RPIV in isoform 2. Curated | 10 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AF050640 mRNA Translation: AAC27453.1 AF013160 mRNA Translation: AAC34362.1 AK314807 mRNA No translation available. AL590714 Genomic DNA No translation available. CH471121 Genomic DNA Translation: EAW52625.1 CH471121 Genomic DNA Translation: EAW52626.1 BC000170 mRNA Translation: AAH00170.1 BC001456 mRNA Translation: AAH01456.1 BC008868 mRNA Translation: AAH08868.1 |
CCDSi | CCDS1224.1 [O75306-1] CCDS53404.1 [O75306-2] |
PIRi | JE0193 |
RefSeqi | NP_001159631.1, NM_001166159.1 [O75306-2] NP_004541.1, NM_004550.4 [O75306-1] XP_005245265.1, XM_005245208.2 XP_016856846.1, XM_017001357.1 |
Genome annotation databases
Keywords - Coding sequence diversityi
Alternative splicingSimilar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AF050640 mRNA Translation: AAC27453.1 AF013160 mRNA Translation: AAC34362.1 AK314807 mRNA No translation available. AL590714 Genomic DNA No translation available. CH471121 Genomic DNA Translation: EAW52625.1 CH471121 Genomic DNA Translation: EAW52626.1 BC000170 mRNA Translation: AAH00170.1 BC001456 mRNA Translation: AAH01456.1 BC008868 mRNA Translation: AAH08868.1 |
CCDSi | CCDS1224.1 [O75306-1] CCDS53404.1 [O75306-2] |
PIRi | JE0193 |
RefSeqi | NP_001159631.1, NM_001166159.1 [O75306-2] NP_004541.1, NM_004550.4 [O75306-1] XP_005245265.1, XM_005245208.2 XP_016856846.1, XM_017001357.1 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
5XTB | electron microscopy | 3.40 | Q | 79-463 | [»] | |
5XTC | electron microscopy | 3.70 | Q | 34-79 | [»] | |
5XTD | electron microscopy | 3.70 | Q | 34-463 | [»] | |
5XTH | electron microscopy | 3.90 | Q | 34-463 | [»] | |
5XTI | electron microscopy | 17.40 | BQ/Q | 34-463 | [»] | |
SMRi | O75306 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
BioGRIDi | 110800, 251 interactors |
ComplexPortali | CPX-577, Mitochondrial respiratory chain complex I |
CORUMi | O75306 |
IntActi | O75306, 84 interactors |
MINTi | O75306 |
STRINGi | 9606.ENSP00000356972 |
Chemistry databases
BindingDBi | O75306 |
ChEMBLi | CHEMBL3039 |
DrugBanki | DB00997, Doxorubicin DB00157, NADH |
DrugCentrali | O75306 |
PTM databases
iPTMneti | O75306 |
PhosphoSitePlusi | O75306 |
SwissPalmi | O75306 |
Genetic variation databases
BioMutai | NDUFS2 |
Proteomic databases
EPDi | O75306 |
jPOSTi | O75306 |
MassIVEi | O75306 |
MaxQBi | O75306 |
PaxDbi | O75306 |
PeptideAtlasi | O75306 |
PRIDEi | O75306 |
ProteomicsDBi | 49883 [O75306-1] |
TopDownProteomicsi | O75306-1 [O75306-1] |
Protocols and materials databases
Antibodypediai | 34301, 306 antibodies from 33 providers |
DNASUi | 4720 |
Genome annotation databases
Organism-specific databases
CTDi | 4720 |
DisGeNETi | 4720 |
GeneCardsi | NDUFS2 |
HGNCi | HGNC:7708, NDUFS2 |
HPAi | ENSG00000158864, Tissue enhanced (skeletal muscle, tongue) |
MalaCardsi | NDUFS2 |
MIMi | 602985, gene 618228, phenotype |
neXtProti | NX_O75306 |
OpenTargetsi | ENSG00000158864 |
Orphaneti | 2609, Isolated complex I deficiency 104, Leber hereditary optic neuropathy 70474, Leigh syndrome with cardiomyopathy 255241, Leigh syndrome with leukodystrophy |
PharmGKBi | PA31519 |
VEuPathDBi | HostDB:ENSG00000158864 |
GenAtlasi | Search... |
Phylogenomic databases
eggNOGi | KOG2870, Eukaryota |
GeneTreei | ENSGT00390000009529 |
HOGENOMi | CLU_015134_1_1_1 |
InParanoidi | O75306 |
OMAi | IMGTSME |
OrthoDBi | 444312at2759 |
PhylomeDBi | O75306 |
TreeFami | TF300370 |
Enzyme and pathway databases
PathwayCommonsi | O75306 |
Reactomei | R-HSA-611105, Respiratory electron transport R-HSA-6799198, Complex I biogenesis |
SignaLinki | O75306 |
SIGNORi | O75306 |
Miscellaneous databases
BioGRID-ORCSi | 4720, 325 hits in 1051 CRISPR screens |
ChiTaRSi | NDUFS2, human |
GeneWikii | NDUFS2 |
GenomeRNAii | 4720 |
Pharosi | O75306, Tclin |
PROi | PR:O75306 |
RNActi | O75306, protein |
SOURCEi | Search... |
Gene expression databases
Bgeei | ENSG00000158864, Expressed in right ovary and 241 other tissues |
Genevisiblei | O75306, HS |
Family and domain databases
Gene3Di | 1.10.645.10, 1 hit |
HAMAPi | MF_01358, NDH1_NuoD, 1 hit |
InterProi | View protein in InterPro IPR001135, NADH_Q_OxRdtase_suD IPR014029, NADH_UbQ_OxRdtase_49kDa_CS IPR022885, NDH1_su_D/H IPR029014, NiFe-Hase_large |
PANTHERi | PTHR11993, PTHR11993, 1 hit |
Pfami | View protein in Pfam PF00346, Complex1_49kDa, 1 hit |
SUPFAMi | SSF56762, SSF56762, 1 hit |
TIGRFAMsi | TIGR01962, NuoD, 1 hit |
PROSITEi | View protein in PROSITE PS00535, COMPLEX1_49K, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | NDUS2_HUMAN | |
Accessioni | O75306Primary (citable) accession number: O75306 Secondary accession number(s): D3DVG7 Q9UEV3 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | July 15, 1999 |
Last sequence update: | April 16, 2002 | |
Last modified: | February 23, 2022 | |
This is version 211 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Chordata Protein Annotation Program | |
Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. |
Miscellaneousi
Keywords - Technical termi
3D-structure, Reference proteomeDocuments
- Human chromosome 1
Human chromosome 1: entries, gene names and cross-references to MIM - Human entries with genetic variants
List of human entries with genetic variants - Human variants curated from literature reports
Index of human variants curated from literature reports - MIM cross-references
Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot - PDB cross-references
Index of Protein Data Bank (PDB) cross-references - SIMILARITY comments
Index of protein domains and families