SDC3

Functionⁱ

Cell surface proteoglycan that may bear heparan sulfate (By similarity). May have a role in the organization of cell shape by affecting the actin cytoskeleton, possibly by transferring signals from the cell surface in a sugar-dependent mechanism.By similarity1 Publication

GO - Molecular functionⁱ

identical protein binding
Source: IntAct
Inferred from physical interactionⁱ
- 18093920

View the complete GO annotation on QuickGO ...

GO - Biological processⁱ

glycosaminoglycan biosynthetic process Source: Reactome
glycosaminoglycan catabolic process Source: Reactome
leukocyte migration Source: Reactome
retinoid metabolic process Source: Reactome

View the complete GO annotation on QuickGO ...

Enzyme and pathway databases

Reactomeⁱ	R-HSA-1971475 A tetrasaccharide linker sequence is required for GAG synthesis R-HSA-2022928 HS-GAG biosynthesis R-HSA-2024096 HS-GAG degradation R-HSA-202733 Cell surface interactions at the vascular wall R-HSA-3000170 Syndecan interactions R-HSA-3560783 Defective B4GALT7 causes EDS, progeroid type R-HSA-3560801 Defective B3GAT3 causes JDSSDHD R-HSA-3656237 Defective EXT2 causes exostoses 2 R-HSA-3656253 Defective EXT1 causes exostoses 1, TRPS2 and CHDS R-HSA-4420332 Defective B3GALT6 causes EDSP2 and SEMDJL1 R-HSA-975634 Retinoid metabolism and transport
SIGNORⁱ	O75056

Reactomeⁱ

R-HSA-1971475 A tetrasaccharide linker sequence is required for GAG synthesis
R-HSA-2022928 HS-GAG biosynthesis
R-HSA-2024096 HS-GAG degradation
R-HSA-202733 Cell surface interactions at the vascular wall
R-HSA-3000170 Syndecan interactions
R-HSA-3560783 Defective B4GALT7 causes EDS, progeroid type
R-HSA-3560801 Defective B3GAT3 causes JDSSDHD
R-HSA-3656237 Defective EXT2 causes exostoses 2
R-HSA-3656253 Defective EXT1 causes exostoses 1, TRPS2 and CHDS
R-HSA-4420332 Defective B3GALT6 causes EDSP2 and SEMDJL1
R-HSA-975634 Retinoid metabolism and transport

SIGNORⁱ

O75056

Names & Taxonomyⁱ

Protein namesⁱ	Recommended name: Syndecan-3 Short name: SYND3
Gene namesⁱ	Name:SDC3 Synonyms:KIAA0468
Organismⁱ	Homo sapiens (Human)
Taxonomic identifierⁱ	9606 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Dipnotetrapodomorpha › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Boreoeutheria › Euarchontoglires › Primates › Haplorrhini › Simiiformes › Catarrhini › Hominoidea › Hominidae › Homininae › Homo
Proteomesⁱ	UP000005640 Componentⁱ: Chromosome 1

Organism-specific databases

EuPathDBⁱ	HostDB:ENSG00000162512.15
Human Gene Nomenclature Database More...HGNCⁱ	HGNC:10660 SDC3
MIMⁱ	186357 gene
neXtProtⁱ	NX_O75056

Topology

Feature key	Position(s)	DescriptionActions	Length
Topological domainⁱ	1 – 387	ExtracellularSequence analysisAdd BLAST	387
Transmembraneⁱ	388 – 408	HelicalSequence analysisAdd BLAST	21
Topological domainⁱ	409 – 442	CytoplasmicSequence analysisAdd BLAST	34

Keywords - Cellular componentⁱ

Membrane

Pathology & Biotechⁱ

Organism-specific databases

DisGeNET More...DisGeNETⁱ	9672
MalaCards human disease database More...MalaCardsⁱ	SDC3
Open Targets More...OpenTargetsⁱ	ENSG00000162512
PharmGKBⁱ	PA35590

Polymorphism and mutation databases

BioMutaⁱ	SDC3

BioMutaⁱ

SDC3

PTM / Processingⁱ

Molecule processing

Feature key	Position(s)	DescriptionActions	Graphical view	Length
ChainⁱPRO_0000183989	1 – 442	Syndecan-3Add BLAST		442

Amino acid modifications

Feature key	Position(s)	DescriptionActions	Length
Glycosylationⁱ	80	O-linked (Xyl...) (glycosaminoglycan) serineSequence analysis	1
Glycosylationⁱ	82	O-linked (Xyl...) (glycosaminoglycan) serineSequence analysis	1
Glycosylationⁱ	84	O-linked (Xyl...) (glycosaminoglycan) serineSequence analysis	1
Glycosylationⁱ	91	O-linked (Xyl...) (glycosaminoglycan) serineSequence analysis	1
Glycosylationⁱ	314	O-linked (Xyl...) (glycosaminoglycan) serineSequence analysis	1
Glycosylationⁱ	367	O-linked (Xyl...) (glycosaminoglycan) serineSequence analysis	1
Modified residueⁱ	409	Phosphotyrosine1 Publication	1
Modified residueⁱ	419	Phosphotyrosine1 Publication	1
Modified residueⁱ	431	Phosphotyrosine1 Publication	1
Modified residueⁱ	441	Phosphotyrosine1 Publication	1

Post-translational modificationⁱ

O-glycosylated within the Thr/Ser-rich region which could interact with lectin domains on other molecules.Curated

Sites

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Siteⁱ	383 – 384	Cleavage of ectodomainSequence analysis		2

Keywords - PTMⁱ

Glycoprotein, Heparan sulfate, Phosphoprotein, Proteoglycan

Proteomic databases

EPDⁱ	O75056
MaxQB - The MaxQuant DataBase More...MaxQBⁱ	O75056
PaxDbⁱ	O75056
PeptideAtlas More...PeptideAtlasⁱ	O75056
PRIDEⁱ	O75056
ProteomicsDBⁱ	49730
TopDownProteomicsⁱ	O75056

PTM databases

iPTMnetⁱ	O75056
PhosphoSitePlusⁱ	O75056

Expressionⁱ

Tissue specificityⁱ

Expressed in the nervous system, the adrenal gland, and the spleen.1 Publication

Gene expression databases

Bgeeⁱ	ENSG00000162512 Expressed in 188 organ(s), highest expression level in left adrenal gland
CleanExⁱ	HS_SDC3
ExpressionAtlasⁱ	O75056 baseline and differential
Genevisibleⁱ	O75056 HS

Organism-specific databases

Human Protein Atlas More...HPAⁱ	CAB025786 HPA017087 HPA048085

HPAⁱ

CAB025786
HPA017087
HPA048085

Interactionⁱ

Subunit structureⁱ

Interacts with TIAM1.1 Publication

Binary interactionsⁱ

With	Entry	#Exp.	IntAct
itself		3	EBI-1642090,EBI-1642090
SDC2	P34741	2	EBI-1642090,EBI-1172957
SDC4	P31431	2	EBI-1642090,EBI-3913237

GO - Molecular functionⁱ

identical protein binding
Source: IntAct
Inferred from physical interactionⁱ
- 18093920

View the complete GO annotation on QuickGO ...

Protein-protein interaction databases

BioGridⁱ	115027, 14 interactors
Database of interacting proteins More...DIPⁱ	DIP-29944N
IntActⁱ	O75056, 6 interactors
STRINGⁱ	9606.ENSP00000344468

Structureⁱ

3D structure databases

ProteinModelPortalⁱ	O75056
SMRⁱ	O75056
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Family & Domainsⁱ

Compositional bias

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Compositional biasⁱ	115 – 302	Ser/Thr-rich (mucin-like)Add BLAST		188

Sequence similaritiesⁱ

Belongs to the syndecan proteoglycan family.Curated

Keywords - Domainⁱ

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGⁱ	ENOG410IJZ0 Eukaryota ENOG410Y2QY LUCA
Ensembl GeneTree More...GeneTreeⁱ	ENSGT00530000063116
HOGENOMⁱ	HOG000049151
HOVERGENⁱ	HBG004144
InParanoidⁱ	O75056
KEGG Orthology (KO) More...KOⁱ	K16337
OMAⁱ	AQRWRNE
Database of Orthologous Groups More...OrthoDBⁱ	EOG091G0UGA
PhylomeDBⁱ	O75056
TreeFamⁱ	TF320463

Family and domain databases

InterProⁱ	View protein in InterPro IPR003585 Neurexin-like IPR001050 Syndecan IPR031194 Syndecan-3 IPR027789 Syndecan/Neurexin_dom IPR030479 Syndecan_CS
PANTHERⁱ	PTHR10915 PTHR10915, 1 hit PTHR10915:SF7 PTHR10915:SF7, 1 hit
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF01034 Syndecan, 1 hit
SMARTⁱ	View protein in SMART SM00294 4.1m, 1 hit
PROSITEⁱ	View protein in PROSITE PS00964 SYNDECAN, 1 hit

Sequence (1+)ⁱ

Sequence statusⁱ: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show all Align All

O75056-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MKPGPPHRAG AAHGAGAGAG AAAGPGARGL LLPPLLLLLL AGRAAGAQRW 
        60         70         80         90        100
RSENFERPVD LEGSGDDDSF PDDELDDLYS GSGSGYFEQE SGIETAMRFS 
       110        120        130        140        150
PDVALAVSTT PAVLPTTNIQ PVGTPFEELP SERPTLEPAT SPLVVTEVPE 
       160        170        180        190        200
EPSQRATTVS TTMATTAATS TGDPTVATVP ATVATATPST PAAPPFTATT 
       210        220        230        240        250
AVIRTTGVRR LLPLPLTTVA TARATTPEAP SPPTTAAVLD TEAPTPRLVS 
       260        270        280        290        300
TATSRPRALP RPATTQEPDI PERSTLPLGT TAPGPTEVAQ TPTPETFLTT 
       310        320        330        340        350
IRDEPEVPVS GGPSGDFELP EEETTQPDTA NEVVAVGGAA AKASSPPGTL 
       360        370        380        390        400
PKGARPGPGL LDNAIDSGSS AAQLPQKSIL ERKEVLVAVI VGGVVGALFA 
       410        420        430        440 
AFLVTLLIYR MKKKDEGSYT LEEPKQASVT YQKPDKQEEF YA

Length:442

Mass (Da):45,497

Last modified:September 5, 2006 - v2

Checksum:ⁱD4C284CBC36A92E2

GO

Computationally mapped potential isoform sequencesⁱ

There is 1 potential isoform mapped to this entry.BLAST Align Show all Add to basket

	Entry	Entry name		Protein names	Gene names	Length	Annotation

	D3DPN2	D3DPN2_HUMAN		Syndecan Syndecan	SDC3 hCG_15913	384	Annotation score:

Sequence cautionⁱ

The sequence BAA32313 differs from that shown. Intron retention.Curated

Natural variant

Feature key	Position(s)	DescriptionActions	Length
Natural variantⁱVAR_027251	208	V → I. Corresponds to variant dbSNP:rs2491132EnsemblClinVar.	1
Natural variantⁱVAR_027252	303	D → N1 PublicationCorresponds to variant dbSNP:rs4949184Ensembl.	1
Natural variantⁱVAR_027253	329	T → I. Corresponds to variant dbSNP:rs2282440EnsemblClinVar.	1

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AF248634 mRNA Translation: AAK39969.1 AB007937 mRNA Translation: BAA32313.2 Sequence problems. AL445235 Genomic DNA No translation available. BC013974 mRNA No translation available.
The Consensus CDS (CCDS) project More...CCDSⁱ	CCDS30661.1
NCBI Reference Sequences More...RefSeqⁱ	NP_055469.3, NM_014654.3
UniGeneⁱ	Hs.158287

Genome annotation databases

Ensemblⁱ	ENST00000339394; ENSP00000344468; ENSG00000162512
GeneIDⁱ	9672
KEGGⁱ	hsa:9672
UCSC genome browser More...UCSCⁱ	uc001bse.3 human

Keywords - Coding sequence diversityⁱ

Polymorphism

Similar proteinsⁱ

90% Identity
50% Identity

Protein	Similar proteins		Species	Score	Length	Source
O75056	Syndecan		PANTR		480	UniRef90_O75056
Syndecan		PANPA		396
Syndecan		MACNE		440
Syndecan		RHIBE		440
Syndecan		SAIBB		431
+26

Protein	Similar proteins		Species	Score	Length	Source
O75056	Syndecan-3		MOUSE		442	UniRef50_O75056
Syndecan-3		RAT		442
Syndecan		PANTR		480
Syndecan		PANPA		396
Syndecan		RHIBE		440
+205

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AF248634 mRNA Translation: AAK39969.1 AB007937 mRNA Translation: BAA32313.2 Sequence problems. AL445235 Genomic DNA No translation available. BC013974 mRNA No translation available.
CCDSⁱ	CCDS30661.1
RefSeqⁱ	NP_055469.3, NM_014654.3
UniGeneⁱ	Hs.158287

3D structure databases

ProteinModelPortalⁱ	O75056
SMRⁱ	O75056
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein-protein interaction databases

BioGridⁱ	115027, 14 interactors
DIPⁱ	DIP-29944N
IntActⁱ	O75056, 6 interactors
STRINGⁱ	9606.ENSP00000344468

PTM databases

iPTMnetⁱ	O75056
PhosphoSitePlusⁱ	O75056

Polymorphism and mutation databases

BioMutaⁱ	SDC3

BioMutaⁱ

SDC3

Proteomic databases

EPDⁱ	O75056
MaxQBⁱ	O75056
PaxDbⁱ	O75056
PeptideAtlasⁱ	O75056
PRIDEⁱ	O75056
ProteomicsDBⁱ	49730
TopDownProteomicsⁱ	O75056

Protocols and materials databases

The DNASU plasmid repository More...DNASUⁱ	9672
Structural Biology Knowledgebase	Search...

Genome annotation databases

Ensemblⁱ	ENST00000339394; ENSP00000344468; ENSG00000162512
GeneIDⁱ	9672
KEGGⁱ	hsa:9672
UCSCⁱ	uc001bse.3 human

Organism-specific databases

CTDⁱ	9672
DisGeNETⁱ	9672
EuPathDBⁱ	HostDB:ENSG00000162512.15
GeneCardsⁱ	SDC3
H-InvDBⁱ	HIX0000348
HGNCⁱ	HGNC:10660 SDC3
HPAⁱ	CAB025786 HPA017087 HPA048085
MalaCardsⁱ	SDC3
MIMⁱ	186357 gene
neXtProtⁱ	NX_O75056
OpenTargetsⁱ	ENSG00000162512
PharmGKBⁱ	PA35590
HUGEⁱ	Search...
GenAtlas: human gene database More...GenAtlasⁱ	Search...

Phylogenomic databases

eggNOGⁱ	ENOG410IJZ0 Eukaryota ENOG410Y2QY LUCA
GeneTreeⁱ	ENSGT00530000063116
HOGENOMⁱ	HOG000049151
HOVERGENⁱ	HBG004144
InParanoidⁱ	O75056
KOⁱ	K16337
OMAⁱ	AQRWRNE
OrthoDBⁱ	EOG091G0UGA
PhylomeDBⁱ	O75056
TreeFamⁱ	TF320463

Enzyme and pathway databases

Reactomeⁱ	R-HSA-1971475 A tetrasaccharide linker sequence is required for GAG synthesis R-HSA-2022928 HS-GAG biosynthesis R-HSA-2024096 HS-GAG degradation R-HSA-202733 Cell surface interactions at the vascular wall R-HSA-3000170 Syndecan interactions R-HSA-3560783 Defective B4GALT7 causes EDS, progeroid type R-HSA-3560801 Defective B3GAT3 causes JDSSDHD R-HSA-3656237 Defective EXT2 causes exostoses 2 R-HSA-3656253 Defective EXT1 causes exostoses 1, TRPS2 and CHDS R-HSA-4420332 Defective B3GALT6 causes EDSP2 and SEMDJL1 R-HSA-975634 Retinoid metabolism and transport
SIGNORⁱ	O75056

Reactomeⁱ

R-HSA-1971475 A tetrasaccharide linker sequence is required for GAG synthesis
R-HSA-2022928 HS-GAG biosynthesis
R-HSA-2024096 HS-GAG degradation
R-HSA-202733 Cell surface interactions at the vascular wall
R-HSA-3000170 Syndecan interactions
R-HSA-3560783 Defective B4GALT7 causes EDS, progeroid type
R-HSA-3560801 Defective B3GAT3 causes JDSSDHD
R-HSA-3656237 Defective EXT2 causes exostoses 2
R-HSA-3656253 Defective EXT1 causes exostoses 1, TRPS2 and CHDS
R-HSA-4420332 Defective B3GALT6 causes EDSP2 and SEMDJL1
R-HSA-975634 Retinoid metabolism and transport

SIGNORⁱ

O75056

Miscellaneous databases

ChiTaRSⁱ	SDC3 human
GeneWikiⁱ	SDC3
GenomeRNAiⁱ	9672
Protein Ontology More...PROⁱ	PR:O75056
SOURCEⁱ	Search...

Gene expression databases

Bgeeⁱ	ENSG00000162512 Expressed in 188 organ(s), highest expression level in left adrenal gland
CleanExⁱ	HS_SDC3
ExpressionAtlasⁱ	O75056 baseline and differential
Genevisibleⁱ	O75056 HS

Family and domain databases

InterProⁱ	View protein in InterPro IPR003585 Neurexin-like IPR001050 Syndecan IPR031194 Syndecan-3 IPR027789 Syndecan/Neurexin_dom IPR030479 Syndecan_CS
PANTHERⁱ	PTHR10915 PTHR10915, 1 hit PTHR10915:SF7 PTHR10915:SF7, 1 hit
Pfamⁱ	View protein in Pfam PF01034 Syndecan, 1 hit
SMARTⁱ	View protein in SMART SM00294 4.1m, 1 hit
PROSITEⁱ	View protein in PROSITE PS00964 SYNDECAN, 1 hit
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	SDC3_HUMAN
Accessionⁱ	O75056Primary (citable) accession number: O75056 Secondary accession number(s): Q5T1Z6 , Q5T1Z7, Q96CT3, Q96PR8
Entry historyⁱ	Integrated into UniProtKB/Swiss-Prot:	May 30, 2000
	Last sequence update:	September 5, 2006
	Last modified:	November 7, 2018
	This is version 158 of the entry and version 2 of the sequence. See complete history.
Entry statusⁱ	Reviewed (UniProtKB/Swiss-Prot)
Annotation program	Chordata Protein Annotation Program
Disclaimer	Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousⁱ

Keywords - Technical termⁱ

Complete proteome, Reference proteome

Documents

SIMILARITY comments
Index of protein domains and families
Human chromosome 1
Human chromosome 1: entries, gene names and cross-references to MIM
Human entries with polymorphisms or disease mutations
List of human entries with polymorphisms or disease mutations
Human polymorphisms and disease mutations
Index of human polymorphisms and disease mutations
MIM cross-references
Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

UniProtKB

UniParc

Help

UniRef

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Supporting data

UniProtKB - O75056 (SDC3_HUMAN)

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Syndecan-3

Select a section on the left to see content.

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

Organism-specific databases

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Other locations

Extracellular region or secreted

Golgi apparatus

Lysosome

Plasma Membrane

Other locations

Topology

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Organism-specific databases

Polymorphism and mutation databases

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Amino acid modifications

Sites

Keywords - PTMi

Proteomic databases

PTM databases

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Organism-specific databases

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

GO - Molecular functioni

Protein-protein interaction databases

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Compositional bias

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Keywords - Domaini

Phylogenomic databases

Family and domain databases

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

Natural variant

Sequence databases

Genome annotation databases

Keywords - Coding sequence diversityi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein-protein interaction databases

PTM databases

Polymorphism and mutation databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Enzyme and pathway databases

Miscellaneous databases

Gene expression databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Documents

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Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

Pathology & Biotechⁱ

PTM / Processingⁱ

Keywords - PTMⁱ

Expressionⁱ

Interactionⁱ

GO - Molecular functionⁱ

Structureⁱ

Family & Domainsⁱ

Sequence similaritiesⁱ

Keywords - Domainⁱ

Sequence cautionⁱ

Keywords - Coding sequence diversityⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ