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Protein

Pentatricopeptide repeat-containing protein At4g30825, chloroplastic

Gene

At4g30825

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At4g30825, chloroplastic
Gene namesi
Ordered Locus Names:At4g30825
ORF Names:F6I18.270, T10C21.4
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G30825
TAIRilocus:505006535 AT4G30825

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 61ChloroplastSequence analysisAdd BLAST61
ChainiPRO_000036345962 – 904Pentatricopeptide repeat-containing protein At4g30825, chloroplasticAdd BLAST843

Proteomic databases

PaxDbiO65567
PRIDEiO65567

Expressioni

Gene expression databases

ExpressionAtlasiO65567 baseline and differential
GenevisibleiO65567 AT

Interactioni

Protein-protein interaction databases

IntActiO65567, 8 interactors
STRINGi3702.AT4G30825.1

Structurei

3D structure databases

ProteinModelPortaliO65567
SMRiO65567
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati173 – 203PPR 1Add BLAST31
Repeati209 – 243PPR 2Add BLAST35
Repeati244 – 274PPR 3Add BLAST31
Repeati278 – 312PPR 4Add BLAST35
Repeati313 – 347PPR 5Add BLAST35
Repeati348 – 382PPR 6Add BLAST35
Repeati383 – 417PPR 7Add BLAST35
Repeati418 – 452PPR 8Add BLAST35
Repeati487 – 521PPR 9Add BLAST35
Repeati522 – 553PPR 10Add BLAST32
Repeati557 – 591PPR 11Add BLAST35
Repeati592 – 622PPR 12Add BLAST31
Repeati628 – 662PPR 13Add BLAST35
Repeati663 – 697PPR 14Add BLAST35
Repeati698 – 732PPR 15Add BLAST35
Repeati733 – 766PPR 16Add BLAST34
Repeati767 – 801PPR 17Add BLAST35
Repeati802 – 836PPR 18Add BLAST35
Repeati837 – 871PPR 19Add BLAST35
Repeati872 – 904PPR 20Add BLAST33

Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG3800 Eukaryota
KOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000243149
InParanoidiO65567
OMAiYTMINLL
OrthoDBiEOG093601G4
PhylomeDBiO65567

Family and domain databases

Gene3Di1.25.40.10, 6 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 6 hits
PF13041 PPR_2, 3 hits
PF13812 PPR_3, 2 hits
TIGRFAMsiTIGR00756 PPR, 11 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 20 hits

Sequence (1+)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry has 1 described isoform and 5 potential isoforms that are computationally mapped.Show allAlign All

O65567-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGSLRFSIPL DPFDSKRKRF HFSANPSQFP DQFPIHFVTS SIHATRASSI
60 70 80 90 100
GSSTRVLDKI RVSSLGTEAN ENAINSASAA PVERSRSSKL SGDQRGTKKY
110 120 130 140 150
VARKFSFRRG SNDLELENLF VNNGEIDVNY SAIKPGQSLE HCNGILKRLE
160 170 180 190 200
SCSDTNAIKF FDWMRCNGKL VGNFVAYSLI LRVLGRREEW DRAEDLIKEL
210 220 230 240 250
CGFHEFQKSY QVFNTVIYAC TKKGNVKLAS KWFHMMLEFG VRPNVATIGM
260 270 280 290 300
LMGLYQKNWN VEEAEFAFSH MRKFGIVCES AYSSMITIYT RLRLYDKAEE
310 320 330 340 350
VIDLMKQDRV RLKLENWLVM LNAYSQQGKM ELAESILVSM EAAGFSPNII
360 370 380 390 400
AYNTLITGYG KIFKMEAAQG LFHRLCNIGL EPDETSYRSM IEGWGRADNY
410 420 430 440 450
EEAKHYYQEL KRCGYKPNSF NLFTLINLQA KYGDRDGAIK TIEDMTGIGC
460 470 480 490 500
QYSSILGIIL QAYEKVGKID VVPCVLKGSF HNHIRLNQTS FSSLVMAYVK
510 520 530 540 550
HGMVDDCLGL LREKKWRDSA FESHLYHLLI CSCKESGQLT DAVKIYNHKM
560 570 580 590 600
ESDEEINLHI TSTMIDIYTV MGEFSEAEKL YLNLKSSGVV LDRIGFSIVV
610 620 630 640 650
RMYVKAGSLE EACSVLEIMD EQKDIVPDVY LFRDMLRIYQ KCDLQDKLQH
660 670 680 690 700
LYYRIRKSGI HWNQEMYNCV INCCARALPL DELSGTFEEM IRYGFTPNTV
710 720 730 740 750
TFNVLLDVYG KAKLFKKVNE LFLLAKRHGV VDVISYNTII AAYGKNKDYT
760 770 780 790 800
NMSSAIKNMQ FDGFSVSLEA YNTLLDAYGK DKQMEKFRSI LKRMKKSTSG
810 820 830 840 850
PDHYTYNIMI NIYGEQGWID EVADVLKELK ESGLGPDLCS YNTLIKAYGI
860 870 880 890 900
GGMVEEAVGL VKEMRGRNII PDKVTYTNLV TALRRNDEFL EAIKWSLWMK

QMGI
Length:904
Mass (Da):103,309
Last modified:February 10, 2009 - v2
Checksum:i96C0A0C0147B25CD
GO

Computationally mapped potential isoform sequencesi

There are 5 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q84K40Q84K40_ARATH
Cyclin-dependent kinase-activating ...
At4g30820, F6I18.270, F6I18_270
178Annotation score:
A0A1P8B3Q7A0A1P8B3Q7_ARATH
Cyclin-dependent kinase-activating ...
At4g30820, AXX17_At4g35320, F6I18.270, F6I18_270
132Annotation score:
A0A1P8B3T8A0A1P8B3T8_ARATH
Cyclin-dependent kinase-activating ...
At4g30820, F6I18.270, F6I18_270
190Annotation score:
A0A1P8B3P6A0A1P8B3P6_ARATH
Cyclin-dependent kinase-activating ...
At4g30820, F6I18.270, F6I18_270
163Annotation score:
A0A1P8B3P5A0A1P8B3P5_ARATH
Cyclin-dependent kinase-activating ...
At4g30820, F6I18.270, F6I18_270
167Annotation score:

Sequence cautioni

The sequence CAA18211 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence CAB79800 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL022198 Genomic DNA Translation: CAA18211.1 Sequence problems.
AL109787 Genomic DNA No translation available.
AL161577 Genomic DNA Translation: CAB79800.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE85815.1
PIRiG85360
RefSeqiNP_567856.1, NM_119229.2
UniGeneiAt.31802

Genome annotation databases

EnsemblPlantsiAT4G30825.1; AT4G30825.1; AT4G30825
GeneIDi829206
GrameneiAT4G30825.1; AT4G30825.1; AT4G30825
KEGGiath:AT4G30825

Similar proteinsi

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL022198 Genomic DNA Translation: CAA18211.1 Sequence problems.
AL109787 Genomic DNA No translation available.
AL161577 Genomic DNA Translation: CAB79800.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE85815.1
PIRiG85360
RefSeqiNP_567856.1, NM_119229.2
UniGeneiAt.31802

3D structure databases

ProteinModelPortaliO65567
SMRiO65567
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiO65567, 8 interactors
STRINGi3702.AT4G30825.1

Proteomic databases

PaxDbiO65567
PRIDEiO65567

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G30825.1; AT4G30825.1; AT4G30825
GeneIDi829206
GrameneiAT4G30825.1; AT4G30825.1; AT4G30825
KEGGiath:AT4G30825

Organism-specific databases

AraportiAT4G30825
TAIRilocus:505006535 AT4G30825

Phylogenomic databases

eggNOGiKOG3800 Eukaryota
KOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000243149
InParanoidiO65567
OMAiYTMINLL
OrthoDBiEOG093601G4
PhylomeDBiO65567

Miscellaneous databases

PROiPR:O65567

Gene expression databases

ExpressionAtlasiO65567 baseline and differential
GenevisibleiO65567 AT

Family and domain databases

Gene3Di1.25.40.10, 6 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 6 hits
PF13041 PPR_2, 3 hits
PF13812 PPR_3, 2 hits
TIGRFAMsiTIGR00756 PPR, 11 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 20 hits
ProtoNetiSearch...

Entry informationi

Entry nameiPP342_ARATH
AccessioniPrimary (citable) accession number: O65567
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: February 10, 2009
Last modified: April 25, 2018
This is version 107 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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