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Entry version 110 (12 Aug 2020)
Sequence version 1 (01 Aug 1998)
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Protein

Polyadenylate-binding protein-interacting protein 7

Gene

CID7

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Polyadenylate-binding protein-interacting protein 7
Short name:
PABP-interacting protein 7
Short name:
Poly(A)-binding protein-interacting protein 7
Alternative name(s):
PAM2-containing protein CID7
Protein CTC-INTERACTING DOMAIN 7
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:CID7
Ordered Locus Names:At2g26280
ORF Names:T1D16.8
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT2G26280

The Arabidopsis Information Resource

More...
TAIRi
locus:2057775, AT2G26280

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004226411 – 567Polyadenylate-binding protein-interacting protein 7Add BLAST567

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
O64843

PRoteomics IDEntifications database

More...
PRIDEi
O64843

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
246941

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
O64843

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in cauline leaves, stems, rosette leaves, immature siliques and primary inflorescences.1 Publication

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
O64843, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
O64843, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with MPC and PAB2.

2 Publications

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
2520, 5 interactors

Protein interaction database and analysis system

More...
IntActi
O64843, 2 interactors

STRING: functional protein association networks

More...
STRINGi
3702.AT2G26280.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini215 – 259CUEAdd BLAST45
Domaini485 – 567SmrPROSITE-ProRule annotationAdd BLAST83

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a short (usually not more than 20 amino acids) conserved sequence motif of biological significance.<p><a href='/help/motif' target='_top'>More...</a></p>Motifi21 – 31PAM2-likeAdd BLAST11

<p>This subsection of the 'Family and domains' section provides general information on the biological role of a domain. The term 'domain' is intended here in its wide acceptation, it may be a structural domain, a transmembrane region or a functional domain. Several domains are described in this subsection.<p><a href='/help/domain_cc' target='_top'>More...</a></p>Domaini

Contains a PAM2-like motif, which seems to be involved in the binding to the PABC/CTC domain of PAB proteins.

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG2401, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_040596_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
O64843

Identification of Orthologs from Complete Genome Data

More...
OMAi
SADECDV

Database of Orthologous Groups

More...
OrthoDBi
521445at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
O64843

Family and domain databases

Conserved Domains Database

More...
CDDi
cd14371, CUE_CID7_like, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR041806, CID5/6/7_CUE
IPR013899, DUF1771
IPR002625, Smr_dom
IPR036063, Smr_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF08590, DUF1771, 1 hit
PF01713, Smr, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01162, DUF1771, 1 hit
SM00463, SMR, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF160443, SSF160443, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50828, SMR, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 3 potential isoforms that are computationally mapped.Show allAlign All

O64843-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSLTKKASEP KLSGTSIKPT TLNPHAAEFV PFTLRSPSSG GTSTLDTRLL
60 70 80 90 100
ASSSSVGKAV LDRTESSASH HSDEEARQFW SHQLPDDITP DFGLMTQDDN
110 120 130 140 150
SYGSGSLSLA NLSLFDGNEA EKFPSASGGY GFSDQTGLAS HNANGNSLAD
160 170 180 190 200
KSRYPISSFG EDPQRQSFMQ LSPKPWDKQI MNAEQLLGND RERNPFSGKS
210 220 230 240 250
RHGFVNDMIT ESPGDMEVNP VDFLASQFPG FAAESLAEVY FANGCDLQLT
260 270 280 290 300
IEMLTQLELQ VDGGLNQNIS PKTYAPPSLT PMDFPALSIS NSHGIPAQFG
310 320 330 340 350
GDDLQQTGNH YQSPEKDNMF FFKSGPSVSQ PGAIDYVSAV RKLASQDSGM
360 370 380 390 400
WKYERNDSAD SSIGSSRNSG AYKSGRGRSI YSDKLQSRAQ TRPAPVWVET
410 420 430 440 450
GDAVGNMYSE LREEARDYAR LRNVYFEQAR QAYLVGNKAL AKELSVKGQL
460 470 480 490 500
HNMQMKAAHG KAQEAIYRQR NPVGQGNSRG NERMIDLHGL HVSEALQVLK
510 520 530 540 550
HELSVLRSTA RATQERLQIY ICVGTGHHTR GSRTPARLPV AVQRYLLEEE
560
GLDYSEPQAG LLRVIIY
Length:567
Mass (Da):62,147
Last modified:August 1, 1998 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i85F888BE2D90F03E
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1P8B1H7A0A1P8B1H7_ARATH
CTC-interacting domain 7
CID7 CTC-interacting domain 7, At2g26280, T1D16.8, T1D16_8
494Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1P8B1J3A0A1P8B1J3_ARATH
CTC-interacting domain 7
CID7 CTC-interacting domain 7, At2g26280, T1D16.8, T1D16_8
429Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1P8B1N0A0A1P8B1N0_ARATH
CTC-interacting domain 7
CID7 CTC-interacting domain 7, At2g26280, T1D16.8, T1D16_8
415Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti500K → E in BAF00529 (Ref. 3) Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC004484 Genomic DNA Translation: AAC14523.1
CP002685 Genomic DNA Translation: AEC07818.1
CP002685 Genomic DNA Translation: ANM62763.1
AK228618 mRNA Translation: BAF00529.1
BT030338 mRNA Translation: ABO38751.1

Protein sequence database of the Protein Information Resource

More...
PIRi
E84658

NCBI Reference Sequences

More...
RefSeqi
NP_001324896.1, NM_001336050.1
NP_180196.1, NM_128185.3

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT2G26280.1; AT2G26280.1; AT2G26280
AT2G26280.3; AT2G26280.3; AT2G26280

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
817168

Gramene; a comparative resource for plants

More...
Gramenei
AT2G26280.1; AT2G26280.1; AT2G26280
AT2G26280.3; AT2G26280.3; AT2G26280

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT2G26280

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004484 Genomic DNA Translation: AAC14523.1
CP002685 Genomic DNA Translation: AEC07818.1
CP002685 Genomic DNA Translation: ANM62763.1
AK228618 mRNA Translation: BAF00529.1
BT030338 mRNA Translation: ABO38751.1
PIRiE84658
RefSeqiNP_001324896.1, NM_001336050.1
NP_180196.1, NM_128185.3

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

BioGRIDi2520, 5 interactors
IntActiO64843, 2 interactors
STRINGi3702.AT2G26280.1

PTM databases

iPTMnetiO64843

Proteomic databases

PaxDbiO64843
PRIDEiO64843
ProteomicsDBi246941

Genome annotation databases

EnsemblPlantsiAT2G26280.1; AT2G26280.1; AT2G26280
AT2G26280.3; AT2G26280.3; AT2G26280
GeneIDi817168
GrameneiAT2G26280.1; AT2G26280.1; AT2G26280
AT2G26280.3; AT2G26280.3; AT2G26280
KEGGiath:AT2G26280

Organism-specific databases

AraportiAT2G26280
TAIRilocus:2057775, AT2G26280

Phylogenomic databases

eggNOGiKOG2401, Eukaryota
HOGENOMiCLU_040596_0_0_1
InParanoidiO64843
OMAiSADECDV
OrthoDBi521445at2759
PhylomeDBiO64843

Miscellaneous databases

Protein Ontology

More...
PROi
PR:O64843

Gene expression databases

ExpressionAtlasiO64843, baseline and differential
GenevisibleiO64843, AT

Family and domain databases

CDDicd14371, CUE_CID7_like, 1 hit
InterProiView protein in InterPro
IPR041806, CID5/6/7_CUE
IPR013899, DUF1771
IPR002625, Smr_dom
IPR036063, Smr_dom_sf
PfamiView protein in Pfam
PF08590, DUF1771, 1 hit
PF01713, Smr, 1 hit
SMARTiView protein in SMART
SM01162, DUF1771, 1 hit
SM00463, SMR, 1 hit
SUPFAMiSSF160443, SSF160443, 1 hit
PROSITEiView protein in PROSITE
PS50828, SMR, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiCID7_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: O64843
Secondary accession number(s): Q0WQS0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 26, 2013
Last sequence update: August 1, 1998
Last modified: August 12, 2020
This is version 110 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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