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Entry version 89 (07 Oct 2020)
Sequence version 1 (01 Aug 1998)
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Protein

Probable tape measure protein

Gene

yomI

Organism
Bacillus phage SPbeta (Bacillus phage SPBc2) (Bacteriophage SP-beta)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Serves as a base for tail tube protein polymerization and acts as a template for tail length determination. Exolysin involved in host peptidoglycan digestion necessary for viral DNA entry into the host cell (PubMed:14763988).By similarity1 Publication

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

  • Exolytic cleavage of the (1->4)-beta-glycosidic linkage between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc) residues in peptidoglycan, from either the reducing or the non-reducing ends of the peptidoglycan chains, with concomitant formation of a 1,6-anhydrobond in the MurNAc residue.By similarity EC:4.2.2.n1

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei1447PROSITE-ProRule annotation1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionAntimicrobial, Bacteriolytic enzyme, Lyase, Viral long flexible tail ejection system
Biological processDegradation of host cell envelope components during virus entry, Degradation of host peptidoglycans during virus entry, Viral genome ejection through host cell envelope, Viral penetration into host cytoplasm, Viral release from host cell, Viral tail assembly, Virus entry into host cell

Protein family/group databases

MEROPS protease database

More...
MEROPSi
M23.A04

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Probable tape measure proteinBy similarity
Short name:
TMP
Alternative name(s):
TransglycosylaseBy similarity (EC:4.2.2.n1By similarity)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:yomIImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBacillus phage SPbeta (Bacillus phage SPBc2) (Bacteriophage SP-beta)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri66797 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiVirusesDuplodnaviriaHeunggongviraeUroviricotaCaudoviricetesCaudoviralesSiphoviridaeSpbetavirus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section only exists in viral entries and indicates the host(s) either as a specific organism or taxonomic group of organisms that are susceptible to be infected by a virus.<p><a href='/help/virus_host' target='_top'>More...</a></p>Virus hostiBacillus pumilus (Bacillus mesentericus) [TaxID: 1408]
Bacillus subtilis [TaxID: 1423]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000009091 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Virion

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004319481 – 2285Probable tape measure proteinBy similarityAdd BLAST2285

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
O64046

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
O64046

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili12 – 133Sequence analysisAdd BLAST122
Coiled coili174 – 260Sequence analysisAdd BLAST87
Coiled coili298 – 324Sequence analysisAdd BLAST27
Coiled coili620 – 643Sequence analysisAdd BLAST24
Coiled coili768 – 788Sequence analysisAdd BLAST21
Coiled coili843 – 903Sequence analysisAdd BLAST61
Coiled coili985 – 1030Sequence analysisAdd BLAST46
Coiled coili1067 – 1089Sequence analysisAdd BLAST23
Coiled coili1219 – 1262Sequence analysisAdd BLAST44
Coiled coili1328 – 1394Sequence analysisAdd BLAST67
Coiled coili1702 – 1729Sequence analysisAdd BLAST28
Coiled coili1790 – 1837Sequence analysisAdd BLAST48
Coiled coili1875 – 1930Sequence analysisAdd BLAST56
Coiled coili1963 – 2074Sequence analysisAdd BLAST112

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi916 – 919Poly-AspSequence analysis4
Compositional biasi1777 – 1833Gln-richPROSITE-ProRule annotationAdd BLAST57
Compositional biasi1841 – 1942Lys-richPROSITE-ProRule annotationAdd BLAST102

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Keywords - Domaini

Coiled coil

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.70.70.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR011055, Dup_hybrid_motif
IPR023346, Lysozyme-like_dom_sf
IPR016047, Peptidase_M23
IPR010090, Phage_tape_meas
IPR000189, Transglyc_AS
IPR008258, Transglycosylase_SLT_dom_1

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01551, Peptidase_M23, 1 hit
PF10145, PhageMin_Tail, 1 hit
PF01464, SLT, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF51261, SSF51261, 1 hit
SSF53955, SSF53955, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR01760, tape_meas_TP901, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00922, TRANSGLYCOSYLASE, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

O64046-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSQNLKIILT PQADTSSKTV EQLNQQIKSL EKKLNSLKLN TNIDSTTLKA
60 70 80 90 100
LQEFSSAIDT YQKNLKSYNQ TVKETSTVIK NADGSVEKLT QQYKKNGEIL
110 120 130 140 150
QRETKIINNR NTALKQETQE VNKLTQATEK LGQVQKKTVQ RNLQGQPTKV
160 170 180 190 200
VQKNRHGFDD IVYTTDPKTN STSSKTTTNY DQQRRAIEQL KQDLEKLRQQ
210 220 230 240 250
GIVTDTTISS LGRKINTAQS AQQIEALQNR IRMLDDKSAA VAKNNELKKT
260 270 280 290 300
IELYQRQAQV NVQNLNTRYG SSMGSSNRQA VQDYLNAVNS LNVSTGSNNI
310 320 330 340 350
RSQIQSLNMQ FRELASNAQT AANQASSFGA ELTQTFKSMS TYLISGSLFY
360 370 380 390 400
GAISGLKEMV SQAIEIDTLM TNIRRVMNEP DYKYNELLQE SIDLGDTLSN
410 420 430 440 450
KITDILQMTG DFGRMGFDES ELSTLTKTAQ VLQNVSDLTP DDTVNTLTAA
460 470 480 490 500
MLNFNIAAND SISIADKLNE VDNNYAVTTL DLANSIRKAG STASTFGVEL
510 520 530 540 550
NDLIGYTTAI ASTTRESGNI VGNSLKTIFA RIGNNQSSIK ALEQIGISVK
560 570 580 590 600
TAGGEAKSAS DLISEVAGKW DTLSDAQKQN TSIGVAGIYQ LSRFNAMMNN
610 620 630 640 650
FSIAQNAAKT AANSTGSAWS EQQKYADSLQ ARVNKLQNNF TEFAIAASDA
660 670 680 690 700
FISDGLIEFT QAAGSLLNAS TGVIKSVGFL PPLLAAVSTA TLLLSKNTRT
710 720 730 740 750
LASSLILGTR AMGQETLATA GLEAGMTRAA VASRVLKTAL RGLLVSTLVG
760 770 780 790 800
GAFAALGWAL ESLISSFAEA KKAKDDFEQS QQTNVEAITT NKDSTDKLIQ
810 820 830 840 850
QYKELQKVKE SRSLTSDEEQ EYLQVTQQLA QTFPALVKGY DSQGNAILKT
860 870 880 890 900
NKELEKAIEN TKEYLALKKQ ETRDSAKKTF EDASKEIKKS KDELKQYKQI
910 920 930 940 950
ADYNDKGRPK WDLIADDDDY KVAADKAKQS MLKAQSDIES GNAKVKDSVL
960 970 980 990 1000
SIANAYSSID ISNTLKTSIS DVVNKLNLKD DLDPEELEKF SSSLGKLQEK
1010 1020 1030 1040 1050
MQKALDSGDE KAFDNAKKDL QSLLETYSKS DSSIDVFKMS FDKAQKNIKD
1060 1070 1080 1090 1100
GDKSLSSVKS EVGDLGETLA EAGNEAEDFG KKLKEALDAN SVDDIKAAIK
1110 1120 1130 1140 1150
EMSDAMQFDS VQDVLNGDIF NNTKDQVAPL NDLLEKMAEG KSISANEANT
1160 1170 1180 1190 1200
LIQKDKELAQ AISIENGVVK INRDEVIKQR KVKLDAYNDM VTYSNKLMKT
1210 1220 1230 1240 1250
EVNNAIKTLN ADTLRIDSLK KLRKERKLDM SEAELSDLEV KSINNVADAK
1260 1270 1280 1290 1300
KELKKLEEKM LQPGGYSNSQ IEAMQSVKSA LESYISASEE ATSTQEMNKQ
1310 1320 1330 1340 1350
ALVEAGTSLE NWTDQQEKAN EETKTSMYVV DKYKEALEKV NAEIDKYNKQ
1360 1370 1380 1390 1400
VNDYPKYSQK YRDAIKKEIK ALQQKKKLMQ EQAKLLKDQI KSGNITQYGI
1410 1420 1430 1440 1450
VTSTTSSGGT PSSTGGSYSG KYSSYINSAA SKYNVDPALI AAVIQQESGF
1460 1470 1480 1490 1500
NAKARSGVGA MGLMQLMPAT AKSLGVNNAY DPYQNVMGGT KYLAQQLEKF
1510 1520 1530 1540 1550
GGNVEKALAA YNAGPGNVIK YGGIPPFKET QNYVKKIMAN YSKSLSSATS
1560 1570 1580 1590 1600
SIASYYTNNS AFRVSSKYGQ QESGLRSSPH KGTDFAAKAG TAIKSLQSGK
1610 1620 1630 1640 1650
VQIAGYSKTA GNWVVIKQDD GTVAKYMHML NTPSVKAGQS VKAGQTIGKV
1660 1670 1680 1690 1700
GSTGNSTGNH LHLQIEQNGK TIDPEKYMQG IGTSISDASQ AEAERQQGIA
1710 1720 1730 1740 1750
QAKSDLLSLQ GDISSVNDQI QELQYELVQS KLDEFDKRIG DFDVRIAKDE
1760 1770 1780 1790 1800
SMANRYTSDS KEFRKYTSDQ KKAVAEQAKI QQQKVNWIQK EIKTNKALNS
1810 1820 1830 1840 1850
AQRAQLQEEL KQAKLDLISV QDQVRELQKQ LVQSKVDETL KSIEKSSSKT
1860 1870 1880 1890 1900
QGKIKDVDNK ISMTEEDEDK VKYYSKQIKL IQQQQKEAKK YIKQLEEQKK
1910 1920 1930 1940 1950
AAKGFPDIQE QITEEMQNWK DKQKDFNLEL YNTKKSIKDI YKSLADEVVS
1960 1970 1980 1990 2000
IYKEMYEKMR DIELEAHQKA TQDLIDEIDK TDDEAKFQKE LKERQDSIQK
2010 2020 2030 2040 2050
LTDQINQYSL DDSEFGKSKV KELTEQLQKE QLDLDDFLKD RESNKRKEAL
2060 2070 2080 2090 2100
QDQLEKDEES INNKYDNLVN DERAFKKLED KIMNGKITDI AKQLNEFSKF
2110 2120 2130 2140 2150
INTNMESIGK SISNNLIDKL KEASNALNTA VKGNTTGKKV SSFASGGYTG
2160 2170 2180 2190 2200
TGLGAGKLAF LHDKELILNK TDTANILDTV KAVRETAVDD SPKWGQGVKL
2210 2220 2230 2240 2250
ADLIKKGITS IPSLVPNVNQ SMLTNSLIPN LKKIEIPSKT IASSGDKTIN
2260 2270 2280
LTNTFHIDKL IGGESGARSM FESIKNEVVK LNGSM
Length:2,285
Mass (Da):252,312
Last modified:August 1, 1998 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iFF602C227754B357
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF020713 Genomic DNA Translation: AAC13005.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T12796

NCBI Reference Sequences

More...
RefSeqi
NP_046584.1, NC_001884.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
1261425

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
vg:1261425

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF020713 Genomic DNA Translation: AAC13005.1
PIRiT12796
RefSeqiNP_046584.1, NC_001884.1

3D structure databases

SMRiO64046
ModBaseiSearch...

Protein family/group databases

MEROPSiM23.A04

Proteomic databases

PRIDEiO64046

Genome annotation databases

GeneIDi1261425
KEGGivg:1261425

Family and domain databases

Gene3Di2.70.70.10, 1 hit
InterProiView protein in InterPro
IPR011055, Dup_hybrid_motif
IPR023346, Lysozyme-like_dom_sf
IPR016047, Peptidase_M23
IPR010090, Phage_tape_meas
IPR000189, Transglyc_AS
IPR008258, Transglycosylase_SLT_dom_1
PfamiView protein in Pfam
PF01551, Peptidase_M23, 1 hit
PF10145, PhageMin_Tail, 1 hit
PF01464, SLT, 1 hit
SUPFAMiSSF51261, SSF51261, 1 hit
SSF53955, SSF53955, 1 hit
TIGRFAMsiTIGR01760, tape_meas_TP901, 1 hit
PROSITEiView protein in PROSITE
PS00922, TRANSGLYCOSYLASE, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiTMP_BPSPB
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: O64046
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 4, 2015
Last sequence update: August 1, 1998
Last modified: October 7, 2020
This is version 89 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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