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Entry version 162 (12 Aug 2020)
Sequence version 2 (05 Jul 2004)
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Protein
Submitted name:

WD_REPEATS_REGION domain-containing protein

Gene

qui-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

  • response to alkaloid Source: WormBase

Enzyme and pathway databases

SignaLink: a signaling pathway resource with multi-layered regulatory networks

More...
SignaLinki
O62471

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
WD_REPEATS_REGION domain-containing proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:qui-1Imported
ORF Names:CELE_Y45F10B.10Imported, Y45F10B.10Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCaenorhabditis elegansImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri6239 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditinaRhabditomorphaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001940 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome IV

Organism-specific databases

WormBase

More...
WormBasei
Y45F10B.10a ; CE36361 ; WBGene00004265 ; qui-1

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

Encyclopedia of Proteome Dynamics

More...
EPDi
O62471

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
O62471

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
WBGene00004265, Expressed in pharyngeal muscle cell (C elegans) and 4 other tissues

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
O62471, baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
6239.Y45F10B.10a

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
O62471

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini907 – 1456WD_REPEATS_REGIONInterPro annotationAdd BLAST550
<p>This subsection of the 'Family and Domains' section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati907 – 948WDPROSITE-ProRule annotationAdd BLAST42
Repeati949 – 990WDPROSITE-ProRule annotationAdd BLAST42
Repeati991 – 1032WDPROSITE-ProRule annotationAdd BLAST42
Repeati1331 – 1373WDPROSITE-ProRule annotationAdd BLAST43
Repeati1374 – 1415WDPROSITE-ProRule annotationAdd BLAST42

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1507 – 1592DisorderedSequence analysisAdd BLAST86

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1507 – 1547PolarSequence analysisAdd BLAST41
Compositional biasi1569 – 1592PolarSequence analysisAdd BLAST24

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

RepeatARBA annotation, WD repeatPROSITE-ProRule annotationARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG4155, Eukaryota

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
O62471

Identification of Orthologs from Complete Genome Data

More...
OMAi
HHLPWSR

Database of Orthologous Groups

More...
OrthoDBi
183408at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
O62471

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.130.10.10, 4 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR027417, P-loop_NTPase
IPR011047, Quinoprotein_ADH-like_supfam
IPR015943, WD40/YVTN_repeat-like_dom_sf
IPR001680, WD40_repeat
IPR019775, WD40_repeat_CS
IPR017986, WD40_repeat_dom
IPR036322, WD40_repeat_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00400, WD40, 4 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00320, WD40, 12 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF50978, SSF50978, 1 hit
SSF50998, SSF50998, 1 hit
SSF52540, SSF52540, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00678, WD_REPEATS_1, 2 hits
PS50082, WD_REPEATS_2, 5 hits
PS50294, WD_REPEATS_REGION, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

O62471-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MFRGKGQQQV SSTDNIKAMM TAAIGNKLEK RLPLVSTIFV VGNDEEEFNI
60 70 80 90 100
ERRTLWQDVL PDLQNLAFQS NFDLEFCDVP LENGELTNSV AEHVLQMWKD
110 120 130 140 150
NPRSWIVLLL GNRYGNVSVP TSLRKEEYES IRSSIFEENG NVRVFEKAYT
160 170 180 190 200
INRNGAVEEY RLVPSAIKDK KQLAEIIKAL QAGAKAAHEE GSINQVHEQR
210 220 230 240 250
QNRFFSSPLE TFVRSILQVS PCRCLFLLRK FDQLVADPNS PNAFLETNDQ
260 270 280 290 300
NSRKIEDLKN EITLKMNDRV MTHVLRPEST DINYFFNSRD GDKYREKIAR
310 320 330 340 350
QFNEKLKNHL ADINPPVRPE PPKSPMVLAA NEARTHQEFL ENQLALGNLK
360 370 380 390 400
RDYDKRLDEL ASVKVNRGVF LIQGTDLCGK TQALCRLYHK ISDKDAYKVI
410 420 430 440 450
FFTNLTYSSN FAHEAWRTIC LNICSISNID PKEVLEHFKL GGILKSLEEL
460 470 480 490 500
VQKADKPVCI FIDDVHLLKF GHLLSQIGRR TETAPDNLSL FMTSSNVAPV
510 520 530 540 550
NAVFAVTQTV NVDVISENEV VGMVQKMAEK VDKKLTNEQI SAIRPLMAAK
560 570 580 590 600
DGILIAKSFT HEILFNGNSS MKGGMDGRMT RIEKEFGKLA VGNAVKFIAA
610 620 630 640 650
SSHGLTRLEI HDAISADREV LEEMNMSIVY SLLTLDGIIE ALGPILRKVI
660 670 680 690 700
IDDRQIIGIA HSGLISWLRN RYLTSSQDIR SAHLQLSDLF ADLLIDNEQS
710 720 730 740 750
PRHEIAYQSF SQGIKRDNGS PNFRRLRLLW YHCLHSGNLD RLKELSLCHF
760 770 780 790 800
EYVDYVTRYF GISHLLSLYE ECATQILHHD LQVISEQVLV PALVTMARDS
810 820 830 840 850
EQLAAEVIGR LRFTRHENSH FLNSLVDQAM SWVDLYNRQP LLVPLTCWIS
860 870 880 890 900
PPATKVCRSF TLKDWKPGNT VLTLSANHQY ILISGNQSDP GVIYAYHIAS
910 920 930 940 950
EQLIGTFKGH TAAVTCLCSS NDSSLFVSTS FDKTVNVWVF SQSTPTMSLT
960 970 980 990 1000
HHTAKVTCAI LTSDDQYLIT ASADSSAKMI KLETGEVMRS FNDHTGSVVS
1010 1020 1030 1040 1050
LQLTSNNQFL ITGSGDFVVQ MWDVTNGKCI SRMGGLMAPV STLAITSNDA
1060 1070 1080 1090 1100
FVVVACEDET LKVFSTVGGQ ELHELMGHEG KVNSLVCAQD DCQLFAATKS
1110 1120 1130 1140 1150
KVFCYDIHNG QMIDVLDTAQ PFPICSLKIS SDNYFLISPC GPKVTIWNVT
1160 1170 1180 1190 1200
KRNHDAHDVH ADKEGFLTAV ALSNDDKYAA CGTNNGIVAL WDLEVCQCVF
1210 1220 1230 1240 1250
TTIQNKGDPI TCIRYSVDSQ YCISGNQAGC ILILDAQNGG VVRELFMHSS
1260 1270 1280 1290 1300
EVLSIMSLVH NKMISCDIQG KMVIWELFGD DDTPEMVATG VKPPIFVPPT
1310 1320 1330 1340 1350
GRIMVGHCSL SNKEMKIWAF PEEGPPVTRA KLSHSDEITC FATSPKGGNF
1360 1370 1380 1390 1400
IATGSRDMSL KIWQIDKGFL TQVLVGHENV VTCCCISFDE RLVVSGARDE
1410 1420 1430 1440 1450
KIIVWNVQSG DMVCTVNTTA AITSLSMTGD STVVFSTTED GWVETWSTTK
1460 1470 1480 1490 1500
GRLLSTFNAH RPIKKLINSY ESHRMLLLLE NCAQLPILCL HNTPAVGVEA
1510 1520 1530 1540 1550
TRRRSARAQS VSSASNEPVA STSAGEIKKD PILSSNNGGN AQSAPRATAP
1560 1570 1580 1590
KPTFDMLERS KSRTSLIEKD RTTTLTQSNA PPPQKSNMCT LL
Length:1,592
Mass (Da):177,300
Last modified:July 5, 2004 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4FDCEF4ADC5581CB
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
I2HAI7I2HAI7_CAEEL
WD_REPEATS_REGION domain-containing...
qui-1 CELE_Y45F10B.10, Y45F10B.10
115Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
N1NTL8N1NTL8_CAEEL
WD_REPEATS_REGION domain-containing...
qui-1 CELE_Y45F10B.10, Y45F10B.10
1,327Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
BX284604 Genomic DNA Translation: CAA16357.2

Protein sequence database of the Protein Information Resource

More...
PIRi
T26919

NCBI Reference Sequences

More...
RefSeqi
NP_502613.2, NM_070212.3

Genome annotation databases

Ensembl metazoan genome annotation project

More...
EnsemblMetazoai
Y45F10B.10a.1; Y45F10B.10a.1; WBGene00004265

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
178326

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
cel:CELE_Y45F10B.10

UCSC genome browser

More...
UCSCi
Y45F10B.10, c. elegans

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA Translation: CAA16357.2
PIRiT26919
RefSeqiNP_502613.2, NM_070212.3

3D structure databases

SMRiO62471
ModBaseiSearch...

Protein-protein interaction databases

STRINGi6239.Y45F10B.10a

Proteomic databases

EPDiO62471
PaxDbiO62471

Genome annotation databases

EnsemblMetazoaiY45F10B.10a.1; Y45F10B.10a.1; WBGene00004265
GeneIDi178326
KEGGicel:CELE_Y45F10B.10
UCSCiY45F10B.10, c. elegans

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
178326
WormBaseiY45F10B.10a ; CE36361 ; WBGene00004265 ; qui-1

Phylogenomic databases

eggNOGiKOG4155, Eukaryota
InParanoidiO62471
OMAiHHLPWSR
OrthoDBi183408at2759
PhylomeDBiO62471

Enzyme and pathway databases

SignaLinkiO62471

Gene expression databases

BgeeiWBGene00004265, Expressed in pharyngeal muscle cell (C elegans) and 4 other tissues
ExpressionAtlasiO62471, baseline and differential

Family and domain databases

Gene3Di2.130.10.10, 4 hits
InterProiView protein in InterPro
IPR027417, P-loop_NTPase
IPR011047, Quinoprotein_ADH-like_supfam
IPR015943, WD40/YVTN_repeat-like_dom_sf
IPR001680, WD40_repeat
IPR019775, WD40_repeat_CS
IPR017986, WD40_repeat_dom
IPR036322, WD40_repeat_dom_sf
PfamiView protein in Pfam
PF00400, WD40, 4 hits
SMARTiView protein in SMART
SM00320, WD40, 12 hits
SUPFAMiSSF50978, SSF50978, 1 hit
SSF50998, SSF50998, 1 hit
SSF52540, SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS00678, WD_REPEATS_1, 2 hits
PS50082, WD_REPEATS_2, 5 hits
PS50294, WD_REPEATS_REGION, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiO62471_CAEEL
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: O62471
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: August 1, 1998
Last sequence update: July 5, 2004
Last modified: August 12, 2020
This is version 162 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Proteomics identificationCombined sources, Reference proteomeImported
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