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UniProtKB - O60930 (RNH1_HUMAN)

Entry version 176 (13 Feb 2019)
Sequence version 2 (27 Apr 2001)
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Protein

Ribonuclease H1

Gene

RNASEH1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Endonuclease that specifically degrades the RNA of RNA-DNA hybrids (PubMed:10497183). Plays a role in RNA polymerase II (RNAp II) transcription termination by degrading R-loop RNA-DNA hybrid formation at G-rich pause sites located downstream of the poly(A) site and behind the elongating RNAp II (PubMed:21700224).2 Publications

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

  • Endonucleolytic cleavage to 5'-phosphomonoester.PROSITE-ProRule annotation EC:3.1.26.4

<p>This subsection of the ‘Function’ section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

Mg2+Note: Binds 1 Mg2+ ion per subunit. May bind a second metal ion at a regulatory site, or after substrate binding.

<p>This subsection of the ‘Function’ section describes regulatory mechanisms for enzymes, transporters or microbial transcription factors, and reports the components which regulate (by activation or inhibition) the reaction.<p><a href='/help/activity_regulation' target='_top'>More...</a></p>Activity regulationi

In the presence of magnesium, manganese is inhibitory.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Function’ section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the ‘Description’ field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi145Magnesium 1PROSITE-ProRule annotation1
Metal bindingi145Magnesium 2PROSITE-ProRule annotation1
Metal bindingi186Magnesium 1PROSITE-ProRule annotation1
Metal bindingi210Magnesium 1PROSITE-ProRule annotation1
Metal bindingi274Magnesium 2PROSITE-ProRule annotation1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • magnesium ion binding Source: InterPro
  • nucleic acid binding Source: ProtInc
  • ribonuclease activity Source: ProtInc
  • RNA binding Source: ProtInc
  • RNA-DNA hybrid ribonuclease activity Source: UniProtKB
View the complete GO annotation on QuickGO ...

GO - Biological processi

View the complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionEndonuclease, Hydrolase, Nuclease
LigandMagnesium, Metal-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Ribonuclease H1 (EC:3.1.26.4)
Short name:
RNase H1
Alternative name(s):
Ribonuclease H type II
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:RNASEH1
Synonyms:RNH1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHomo sapiens (Human)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9606 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000005640 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

Organism-specific databases

Eukaryotic Pathogen Database Resources

More...EuPathDBi		HostDB:ENSG00000171865.9

Human Gene Nomenclature Database

More...HGNCi		HGNC:18466 RNASEH1

Online Mendelian Inheritance in Man (OMIM)

More...MIMi		604123 gene

neXtProt; the human protein knowledge platform

More...neXtProti		NX_O60930

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Cytoplasm

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the ‘Pathology and Biotech’ section provides information on the disease(s) associated with genetic variations in a given protein. The information is extracted from the scientific literature and diseases that are also described in the <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=omim">OMIM</a> database are represented with a <a href="http://www.uniprot.org/diseases">controlled vocabulary</a> in the following way:<p><a href='/help/involvement_in_disease' target='_top'>More...</a></p>Involvement in diseasei

Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 2 (PEOB2)1 Publication
The disease is caused by mutations affecting the gene represented in this entry.
Disease descriptionA form of progressive external ophthalmoplegia, a mitochondrial myopathy characterized by progressive paralysis of the levator palpebrae, orbicularis oculi, and extraocular muscles. PEOB2 patients manifest exercise intolerance, muscle weakness, and signs and symptoms of spinocerebellar ataxia, such as impaired gait and dysarthria. Some patients may have respiratory insufficiency.
See also OMIM:616479
Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes natural variant(s) of the protein sequence.<p><a href='/help/variant' target='_top'>More...</a></p>Natural variantiVAR_074561142V → I in PEOB2; has partial residual endonuclease activity. 1 PublicationCorresponds to variant dbSNP:rs766294940EnsemblClinVar.1
Natural variantiVAR_074562185A → V in PEOB2; has partial residual endonuclease activity. 1 PublicationCorresponds to variant dbSNP:rs1057517675Ensembl.1

Keywords - Diseasei

Disease mutation, Primary mitochondrial disease, Progressive external ophthalmoplegia

Organism-specific databases

DisGeNET

More...DisGeNETi		246243

MalaCards human disease database

More...MalaCardsi		RNASEH1
MIMi616479 phenotype

Open Targets

More...OpenTargetsi		ENSG00000171865

Orphanet; a database dedicated to information on rare diseases and orphan drugs

More...Orphaneti		329336 Adult-onset chronic progressive external ophthalmoplegia with mitochondrial myopathy

The Pharmacogenetics and Pharmacogenomics Knowledge Base

More...PharmGKBi		PA38543

Chemistry databases

ChEMBL database of bioactive drug-like small molecules

More...ChEMBLi		CHEMBL5893

Polymorphism and mutation databases

BioMuta curated single-nucleotide variation and disease association database

More...BioMutai		RNASEH1

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001954331 – 286Ribonuclease H1Add BLAST286

Proteomic databases

Encyclopedia of Proteome Dynamics

More...EPDi		O60930

jPOST - Japan Proteome Standard Repository/Database

More...jPOSTi		O60930

MaxQB - The MaxQuant DataBase

More...MaxQBi		O60930

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		O60930

PeptideAtlas

More...PeptideAtlasi		O60930

PRoteomics IDEntifications database

More...PRIDEi		O60930

ProteomicsDB human proteome resource

More...ProteomicsDBi		49675

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...iPTMneti		O60930

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...PhosphoSitePlusi		O60930

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Ubiquitous.

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSG00000171865 Expressed in 235 organ(s), highest expression level in secondary oocyte

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		O60930 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		O60930 HS

Organism-specific databases

Human Protein Atlas

More...HPAi		HPA043037

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Monomer.Curated

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...BioGridi		128882, 13 interactors

Protein interaction database and analysis system

More...IntActi		O60930, 10 interactors

Molecular INTeraction database

More...MINTi		O60930

STRING: functional protein association networks

More...STRINGi		9606.ENSP00000313350

Chemistry databases

BindingDB database of measured binding affinities

More...BindingDBi		O60930

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1286
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...PDBei

Protein Data Bank RCSB

More...RCSB PDBi

Protein Data Bank Japan

More...PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2QK9X-ray2.55A136-286[»]
2QKBX-ray2.40A/B136-286[»]
2QKKX-ray3.20A/B/E/F/I/J/M/N/R/S/W136-286[»]
3BSUX-ray2.10A/B/C/F/G/H27-76[»]

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...ProteinModelPortali		O60930

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		O60930

Database of comparative protein structure models

More...ModBasei		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...EvolutionaryTracei		O60930

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini136 – 282RNase HPROSITE-ProRule annotationAdd BLAST147

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the RNase H family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG3752 Eukaryota
COG0328 LUCA

Ensembl GeneTree

More...GeneTreei		ENSGT00390000003466

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		HOG000040465

The HOVERGEN Database of Homologous Vertebrate Genes

More...HOVERGENi		HBG002135

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		O60930

KEGG Orthology (KO)

More...KOi		K03469

Identification of Orthologs from Complete Genome Data

More...OMAi		ELWYGLY

Database of Orthologous Groups

More...OrthoDBi		1434144at2759

Database for complete collections of gene phylogenies

More...PhylomeDBi		O60930

TreeFam database of animal gene trees

More...TreeFami		TF313356

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		3.30.420.10, 1 hit
3.40.970.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR009027 Ribosomal_L9/RNase_H1_N
IPR017067 RNase_H1_euk
IPR011320 RNase_H1_N
IPR037056 RNase_H1_N_sf
IPR012337 RNaseH-like_sf
IPR002156 RNaseH_domain
IPR036397 RNaseH_sf

Pfam protein domain database

More...Pfami		View protein in Pfam
PF01693 Cauli_VI, 1 hit
PF00075 RNase_H, 1 hit

PIRSF; a whole-protein classification database

More...PIRSFi		PIRSF036852 Ribonuclease_H1_euk, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF53098 SSF53098, 1 hit
SSF55658 SSF55658, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50879 RNASE_H, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

O60930-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSWLLFLAHR VALAALPCRR GSRGFGMFYA VRRGRKTGVF LTWNECRAQV 
        60         70         80         90        100
DRFPAARFKK FATEDEAWAF VRKSASPEVS EGHENQHGQE SEAKASKRLR 
       110        120        130        140        150
EPLDGDGHES AEPYAKHMKP SVEPAPPVSR DTFSYMGDFV VVYTDGCCSS 
       160        170        180        190        200
NGRRRPRAGI GVYWGPGHPL NVGIRLPGRQ TNQRAEIHAA CKAIEQAKTQ 
       210        220        230        240        250
NINKLVLYTD SMFTINGITN WVQGWKKNGW KTSAGKEVIN KEDFVALERL 
       260        270        280 
TQGMDIQWMH VPGHSGFIGN EEADRLAREG AKQSED
Length:286
Mass (Da):32,064
Last modified:April 27, 2001 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i400FE04E7E85CA6A
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F8WBP0F8WBP0_HUMAN
Ribonuclease H1
RNASEH1
43Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F8WD93F8WD93_HUMAN
Ribonuclease H1
RNASEH1
43Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti24G → R in AAV38476 (Ref. 5) Curated1
Sequence conflicti33R → K in CAG46619 (Ref. 4) Curated1
Sequence conflicti68W → R in AAV38476 (Ref. 5) Curated1
Sequence conflicti89Q → R in CAA11835 (PubMed:9894807).Curated1
Sequence conflicti136M → I in CAG46619 (Ref. 4) Curated1
Sequence conflicti223Q → R in CAA11835 (PubMed:9894807).Curated1

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_0234694L → F2 PublicationsCorresponds to variant dbSNP:rs1136545Ensembl.1
Natural variantiVAR_074561142V → I in PEOB2; has partial residual endonuclease activity. 1 PublicationCorresponds to variant dbSNP:rs766294940EnsemblClinVar.1
Natural variantiVAR_074562185A → V in PEOB2; has partial residual endonuclease activity. 1 PublicationCorresponds to variant dbSNP:rs1057517675Ensembl.1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AF048995 mRNA Translation: AAC78564.1
AF048994 mRNA Translation: AAC78563.1
AF039652 mRNA Translation: AAC09261.1
AJ224117 mRNA Translation: CAA11835.1
CR541820 mRNA Translation: CAG46619.1
BT019670 mRNA Translation: AAV38476.1
AK075490 mRNA Translation: BAG52156.1
AC108488 Genomic DNA Translation: AAX82026.1
CH471053 Genomic DNA Translation: EAX01061.1
BC002973 mRNA Translation: AAH02973.1

The Consensus CDS (CCDS) project

More...CCDSi		CCDS1647.1

NCBI Reference Sequences

More...RefSeqi		NP_002927.2, NM_002936.4

UniGene gene-oriented nucleotide sequence clusters

More...UniGenei		Hs.568006

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENST00000315212; ENSP00000313350; ENSG00000171865

Database of genes from NCBI RefSeq genomes

More...GeneIDi		246243

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		hsa:246243

UCSC genome browser

More...UCSCi		uc002qxt.5 human

Keywords - Coding sequence diversityi

Polymorphism

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

<p>This subsection of the <a href="http://www.uniprot.org/manual/cross_references_section">Cross-references</a> section provides links to various web resources that are relevant for a specific protein.<p><a href='/help/web_resource' target='_top'>More...</a></p>Web resourcesi

Wikipedia

RNase H entry

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF048995 mRNA Translation: AAC78564.1
AF048994 mRNA Translation: AAC78563.1
AF039652 mRNA Translation: AAC09261.1
AJ224117 mRNA Translation: CAA11835.1
CR541820 mRNA Translation: CAG46619.1
BT019670 mRNA Translation: AAV38476.1
AK075490 mRNA Translation: BAG52156.1
AC108488 Genomic DNA Translation: AAX82026.1
CH471053 Genomic DNA Translation: EAX01061.1
BC002973 mRNA Translation: AAH02973.1
CCDSiCCDS1647.1
RefSeqiNP_002927.2, NM_002936.4
UniGeneiHs.568006

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2QK9X-ray2.55A136-286[»]
2QKBX-ray2.40A/B136-286[»]
2QKKX-ray3.20A/B/E/F/I/J/M/N/R/S/W136-286[»]
3BSUX-ray2.10A/B/C/F/G/H27-76[»]
ProteinModelPortaliO60930
SMRiO60930
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi128882, 13 interactors
IntActiO60930, 10 interactors
MINTiO60930
STRINGi9606.ENSP00000313350

Chemistry databases

BindingDBiO60930
ChEMBLiCHEMBL5893

PTM databases

iPTMnetiO60930
PhosphoSitePlusiO60930

Polymorphism and mutation databases

BioMutaiRNASEH1

Proteomic databases

EPDiO60930
jPOSTiO60930
MaxQBiO60930
PaxDbiO60930
PeptideAtlasiO60930
PRIDEiO60930
ProteomicsDBi49675

Protocols and materials databases

The DNASU plasmid repository

More...DNASUi		246243
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000315212; ENSP00000313350; ENSG00000171865
GeneIDi246243
KEGGihsa:246243
UCSCiuc002qxt.5 human

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		246243
DisGeNETi246243
EuPathDBiHostDB:ENSG00000171865.9

GeneCards: human genes, protein and diseases

More...GeneCardsi		RNASEH1

H-Invitational Database, human transcriptome db

More...H-InvDBi		HIX0039191
HGNCiHGNC:18466 RNASEH1
HPAiHPA043037
MalaCardsiRNASEH1
MIMi604123 gene
616479 phenotype
neXtProtiNX_O60930
OpenTargetsiENSG00000171865
Orphaneti329336 Adult-onset chronic progressive external ophthalmoplegia with mitochondrial myopathy
PharmGKBiPA38543

GenAtlas: human gene database

More...GenAtlasi		Search...

Phylogenomic databases

eggNOGiKOG3752 Eukaryota
COG0328 LUCA
GeneTreeiENSGT00390000003466
HOGENOMiHOG000040465
HOVERGENiHBG002135
InParanoidiO60930
KOiK03469
OMAiELWYGLY
OrthoDBi1434144at2759
PhylomeDBiO60930
TreeFamiTF313356

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...ChiTaRSi		RNASEH1 human
EvolutionaryTraceiO60930

The Gene Wiki collection of pages on human genes and proteins

More...GeneWikii		RNASEH1

Database of phenotypes from RNA interference screens in Drosophila and Homo sapiens

More...GenomeRNAii		246243

Protein Ontology

More...PROi		PR:O60930

The Stanford Online Universal Resource for Clones and ESTs

More...SOURCEi		Search...

Gene expression databases

BgeeiENSG00000171865 Expressed in 235 organ(s), highest expression level in secondary oocyte
ExpressionAtlasiO60930 baseline and differential
GenevisibleiO60930 HS

Family and domain databases

Gene3Di3.30.420.10, 1 hit
3.40.970.10, 1 hit
InterProiView protein in InterPro
IPR009027 Ribosomal_L9/RNase_H1_N
IPR017067 RNase_H1_euk
IPR011320 RNase_H1_N
IPR037056 RNase_H1_N_sf
IPR012337 RNaseH-like_sf
IPR002156 RNaseH_domain
IPR036397 RNaseH_sf
PfamiView protein in Pfam
PF01693 Cauli_VI, 1 hit
PF00075 RNase_H, 1 hit
PIRSFiPIRSF036852 Ribonuclease_H1_euk, 1 hit
SUPFAMiSSF53098 SSF53098, 1 hit
SSF55658 SSF55658, 1 hit
PROSITEiView protein in PROSITE
PS50879 RNASE_H, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRNH1_HUMAN
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: O60930
Secondary accession number(s): B3KQU4
, O60523, O60857, Q57Z93, Q5U0C1, Q6FHD4
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 27, 2001
Last sequence update: April 27, 2001
Last modified: February 13, 2019
This is version 176 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Human chromosome 2
    Human chromosome 2: entries, gene names and cross-references to MIM
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  6. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
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