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Protein

Voltage-dependent L-type calcium channel subunit alpha-1F

Gene

CACNA1F

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Isoform 1: Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1F gives rise to L-type calcium currents. Long-lasting (L-type) calcium channels belong to the 'high-voltage activated' (HVA) group. They are blocked by dihydropyridines (DHP), phenylalkylamines, and by benzothiazepines. Activates at more negative voltages and does not undergo calcium-dependent inactivation (CDI), due to incoming calcium ions, during depolarization.1 Publication
Isoform 4: Voltage-dependent L-type calcium channel activates at more hyperpolarized voltages and exhibits a robust calcium-dependent inactivation (CDI), due to incoming calcium ions, during depolarizations.1 Publication
Isoform 6: Voltage-dependent L-type calcium channel activates at more hyperpolarized voltages and exibits a robust calcium-dependent inactivation (CDI), due to incoming calcium ions, during depolarizations.1 Publication

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection describes interesting single amino acid sites on the sequence that are not defined in any other subsection. This subsection can be displayed in different sections (‘Function’, ‘PTM / Processing’, ‘Pathology and Biotech’) according to its content.<p><a href='/help/site' target='_top'>More...</a></p>Sitei330Calcium ion selectivity and permeabilityBy similarity1
Sitei711Calcium ion selectivity and permeabilityBy similarity1
Sitei1086Calcium ion selectivity and permeabilityBy similarity1
Sitei1383Calcium ion selectivity and permeabilityBy similarity1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Function’ section specifies the position(s) of the calcium-binding region(s) within the protein. One common calcium-binding motif is the EF-hand, but other calcium-binding motifs also exist.<p><a href='/help/ca_bind' target='_top'>More...</a></p>Calcium bindingi1470 – 1481By similarityAdd BLAST12

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionCalcium channel, Ion channel, Voltage-gated channel
Biological processCalcium transport, Ion transport, Sensory transduction, Transport, Vision
LigandCalcium, Metal-binding

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

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Reactomei
R-HSA-5576892 Phase 0 - rapid depolarisation
R-HSA-5576893 Phase 2 - plateau phase

Protein family/group databases

Transport Classification Database

More...
TCDBi
1.A.1.11.11 the voltage-gated ion channel (vic) superfamily

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Voltage-dependent L-type calcium channel subunit alpha-1FCurated
Alternative name(s):
Voltage-gated calcium channel subunit alpha Cav1.4
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:CACNA1FImported
Synonyms:CACNAF1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHomo sapiens (Human)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9606 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000005640 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome X

Organism-specific databases

Eukaryotic Pathogen Database Resources

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EuPathDBi
HostDB:ENSG00000102001.12

Human Gene Nomenclature Database

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HGNCi
HGNC:1393 CACNA1F

Online Mendelian Inheritance in Man (OMIM)

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MIMi
300110 gene

neXtProt; the human protein knowledge platform

More...
neXtProti
NX_O60840

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the subcellular compartment where each non-membrane region of a membrane-spanning protein is found.<p><a href='/help/topo_dom' target='_top'>More...</a></p>Topological domaini1 – 92CytoplasmicSequence analysisAdd BLAST92
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei93 – 111Helical; Name=S1 of repeat ISequence analysisAdd BLAST19
Topological domaini112 – 129ExtracellularSequence analysisAdd BLAST18
Transmembranei130 – 149Helical; Name=S2 of repeat ISequence analysisAdd BLAST20
Topological domaini150 – 161CytoplasmicSequence analysisAdd BLAST12
Transmembranei162 – 180Helical; Name=S3 of repeat ISequence analysisAdd BLAST19
Topological domaini181 – 201ExtracellularSequence analysisAdd BLAST21
Transmembranei202 – 220Helical; Name=S4 of repeat ISequence analysisAdd BLAST19
Topological domaini221 – 239CytoplasmicSequence analysisAdd BLAST19
Transmembranei240 – 259Helical; Name=S5 of repeat ISequence analysisAdd BLAST20
Topological domaini260 – 347ExtracellularSequence analysisAdd BLAST88
Transmembranei348 – 372Helical; Name=S6 of repeat ISequence analysisAdd BLAST25
Topological domaini373 – 529CytoplasmicSequence analysisAdd BLAST157
Transmembranei530 – 549Helical; Name=S1 of repeat IISequence analysisAdd BLAST20
Topological domaini550 – 564ExtracellularSequence analysisAdd BLAST15
Transmembranei565 – 583Helical; Name=S2 of repeat IISequence analysisAdd BLAST19
Topological domaini584 – 591CytoplasmicSequence analysis8
Transmembranei592 – 610Helical; Name=S3 of repeat IISequence analysisAdd BLAST19
Topological domaini611 – 620ExtracellularSequence analysis10
Transmembranei621 – 639Helical; Name=S4 of repeat IISequence analysisAdd BLAST19
Topological domaini640 – 658CytoplasmicSequence analysisAdd BLAST19
Transmembranei659 – 679Helical; Name=S5 of repeat IISequence analysisAdd BLAST21
Topological domaini680 – 733ExtracellularSequence analysisAdd BLAST54
Transmembranei734 – 758Helical; Name=S6 of repeat IISequence analysisAdd BLAST25
Topological domaini759 – 871CytoplasmicSequence analysisAdd BLAST113
Transmembranei872 – 890Helical; Name=S1 of repeat IIISequence analysisAdd BLAST19
Topological domaini891 – 906ExtracellularSequence analysisAdd BLAST16
Transmembranei907 – 926Helical; Name=S2 of repeat IIISequence analysisAdd BLAST20
Topological domaini927 – 938CytoplasmicSequence analysisAdd BLAST12
Transmembranei939 – 957Helical; Name=S3 of repeat IIISequence analysisAdd BLAST19
Topological domaini958 – 963ExtracellularSequence analysis6
Transmembranei964 – 983Helical; Name=S4 of repeat IIISequence analysisAdd BLAST20
Topological domaini984 – 1002CytoplasmicSequence analysisAdd BLAST19
Transmembranei1003 – 1022Helical; Name=S5 of repeat IIISequence analysisAdd BLAST20
Topological domaini1023 – 1112ExtracellularSequence analysisAdd BLAST90
Transmembranei1113 – 1133Helical; Name=S6 of repeat IIISequence analysisAdd BLAST21
Topological domaini1134 – 1190CytoplasmicSequence analysisAdd BLAST57
Transmembranei1191 – 1209Helical; Name=S1 of repeat IVSequence analysisAdd BLAST19
Topological domaini1210 – 1224ExtracellularSequence analysisAdd BLAST15
Transmembranei1225 – 1244Helical; Name=S2 of repeat IVSequence analysisAdd BLAST20
Topological domaini1245 – 1251CytoplasmicSequence analysis7
Transmembranei1252 – 1273Helical; Name=S3 of repeat IVSequence analysisAdd BLAST22
Topological domaini1274 – 1290ExtracellularSequence analysisAdd BLAST17
Transmembranei1291 – 1310Helical; Name=S4 of repeat IVSequence analysisAdd BLAST20
Topological domaini1311 – 1329CytoplasmicSequence analysisAdd BLAST19
Transmembranei1330 – 1349Helical; Name=S5 of repeat IVSequence analysisAdd BLAST20
Topological domaini1350 – 1416ExtracellularSequence analysisAdd BLAST67
Transmembranei1417 – 1441Helical; Name=S6 of repeat IVSequence analysisAdd BLAST25
Topological domaini1442 – 1977CytoplasmicSequence analysisAdd BLAST536

Keywords - Cellular componenti

Membrane

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the ‘Pathology and Biotech’ section provides information on the disease(s) associated with genetic variations in a given protein. The information is extracted from the scientific literature and diseases that are also described in the <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=omim">OMIM</a> database are represented with a <a href="http://www.uniprot.org/diseases">controlled vocabulary</a> in the following way:<p><a href='/help/involvement_in_disease' target='_top'>More...</a></p>Involvement in diseasei

Night blindness, congenital stationary, 2A (CSNB2A)7 Publications
The disease is caused by mutations affecting the gene represented in this entry.
Disease descriptionA non-progressive retinal disorder characterized by impaired night vision, often associated with nystagmus and myopia.
See also OMIM:300071
Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes natural variant(s) of the protein sequence.<p><a href='/help/variant' target='_top'>More...</a></p>Natural variantiVAR_03080874C → R in CSNB2A. 1 Publication1
Natural variantiVAR_030809150G → R in CSNB2A. 1 Publication1
Natural variantiVAR_030810229S → P in CSNB2A. 1 Publication1
Natural variantiVAR_030811261G → R in CSNB2A. 1 Publication1
Natural variantiVAR_001504369G → D in CSNB2A. 3 PublicationsCorresponds to variant dbSNP:rs122456133EnsemblClinVar.1
Natural variantiVAR_001505519R → Q in CSNB2A. 1 PublicationCorresponds to variant dbSNP:rs34162630EnsemblClinVar.1
Natural variantiVAR_071433603G → R in AIED and CSNB2A. 1 PublicationCorresponds to variant dbSNP:rs201654095Ensembl.1
Natural variantiVAR_030812635V → I in CSNB2A. 1 PublicationCorresponds to variant dbSNP:rs141010716EnsemblClinVar.1
Natural variantiVAR_030813674G → D in CSNB2A. 1 Publication1
Natural variantiVAR_030814753F → C in CSNB2A. 1 Publication1
Natural variantiVAR_030815756I → T in CSNB2A; increases the number of mutant channels open at physiologic membrane potential and allows for persistent Ca(2+) entry due to reduced channel inactivation resulting in a gain-of-function defect. 1 PublicationCorresponds to variant dbSNP:rs122456136EnsemblClinVar.1
Natural variantiVAR_030816860L → P in CSNB2A. 1 Publication1
Natural variantiVAR_030817928A → D in CSNB2A. 1 Publication1
Natural variantiVAR_0308181018G → R in CSNB2A. 1 PublicationCorresponds to variant dbSNP:rs1249437161Ensembl.1
Natural variantiVAR_0015061060R → W in CSNB2A. 2 Publications1
Natural variantiVAR_0308191079L → P in CSNB2A. 1 Publication1
Natural variantiVAR_0015071375L → H in CSNB2A. 1 Publication1
Natural variantiVAR_0308201499C → R in CSNB2A. 1 Publication1
Natural variantiVAR_0308211500P → R in CSNB2A. 1 Publication1
Natural variantiVAR_0308221508L → P in CSNB2A. 1 Publication1
Cone-rod dystrophy, X-linked 3 (CORDX3)1 Publication
The disease is caused by mutations affecting the gene represented in this entry.
Disease descriptionAn inherited retinal dystrophy characterized by retinal pigment deposits visible on fundus examination, predominantly in the macular region, and initial loss of cone photoreceptors followed by rod degeneration. This leads to decreased visual acuity and sensitivity in the central visual field, followed by loss of peripheral vision. Severe loss of vision occurs earlier than in retinitis pigmentosa, due to cone photoreceptors degenerating at a higher rate than rod photoreceptors.
See also OMIM:300476
Aaland island eye disease (AIED)2 Publications
The disease is caused by mutations affecting the gene represented in this entry.
Disease descriptionA retinal disease characterized by a combination of fundus hypopigmentation, decreased visual acuity due to foveal hypoplasia, nystagmus, astigmatism, protan color vision defect, myopia, and defective dark adaptation. Except for progression of axial myopia, the disease can be considered to be a stationary condition. Electroretinography reveals abnormalities in both photopic and scotopic functions.
See also OMIM:300600
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_071433603G → R in AIED and CSNB2A. 1 PublicationCorresponds to variant dbSNP:rs201654095Ensembl.1

Keywords - Diseasei

Cone-rod dystrophy, Congenital stationary night blindness, Disease mutation

Organism-specific databases

DisGeNET

More...
DisGeNETi
778

GeneReviews a resource of expert-authored, peer-reviewed disease descriptions.

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GeneReviewsi
CACNA1F

MalaCards human disease database

More...
MalaCardsi
CACNA1F
MIMi300071 phenotype
300476 phenotype
300600 phenotype

Open Targets

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OpenTargetsi
ENSG00000102001

Orphanet; a database dedicated to information on rare diseases and orphan drugs

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Orphaneti
178333 Aaland Islands eye disease
1872 Cone rod dystrophy
215 Congenital stationary night blindness

The Pharmacogenetics and Pharmacogenomics Knowledge Base

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PharmGKBi
PA26010

Chemistry databases

ChEMBL database of bioactive drug-like small molecules

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ChEMBLi
CHEMBL2363032

Drug and drug target database

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DrugBanki
DB00568 Cinnarizine
DB04920 Clevidipine
DB04855 Dronedarone
DB01388 Mibefradil
DB00393 Nimodipine
DB00421 Spironolactone
DB00661 Verapamil

IUPHAR/BPS Guide to PHARMACOLOGY

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GuidetoPHARMACOLOGYi
531

Polymorphism and mutation databases

BioMuta curated single-nucleotide variation and disease association database

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BioMutai
CACNA1F

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00000539501 – 1977Voltage-dependent L-type calcium channel subunit alpha-1FAdd BLAST1977

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi295N-linked (GlcNAc...) asparagineSequence analysis1
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei1452Phosphoserine; by PKASequence analysis1

Keywords - PTMi

Disulfide bond, Glycoprotein, Phosphoprotein

Proteomic databases

jPOST - Japan Proteome Standard Repository/Database

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jPOSTi
O60840

PaxDb, a database of protein abundance averages across all three domains of life

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PaxDbi
O60840

PeptideAtlas

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PeptideAtlasi
O60840

PRoteomics IDEntifications database

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PRIDEi
O60840

ProteomicsDB human proteome resource

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ProteomicsDBi
49626
49627 [O60840-2]

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

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iPTMneti
O60840

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

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PhosphoSitePlusi
O60840

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expression in skeletal muscle and retina (PubMed:10873387). Isoform 4 is expressed in retina (PubMed:27226626).2 Publications

Gene expression databases

Bgee dataBase for Gene Expression Evolution

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Bgeei
ENSG00000102001 Expressed in 70 organ(s), highest expression level in right lung

CleanEx database of gene expression profiles

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CleanExi
HS_CACNA1F

ExpressionAtlas, Differential and Baseline Expression

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ExpressionAtlasi
O60840 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

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Genevisiblei
O60840 HS

Organism-specific databases

Human Protein Atlas

More...
HPAi
HPA068379

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Voltage-dependent calcium channels are multisubunit complexes, consisting of alpha-1, alpha-2, beta and delta subunits in a 1:1:1:1 ratio. The channel activity is directed by the pore-forming and voltage-sensitive alpha-1 subunit. In many cases, this subunit is sufficient to generate voltage-sensitive calcium channel activity. The auxiliary subunits beta and alpha-2/delta linked by a disulfide bridge regulate the channel activity. Interacts (via IQ domain) with CABP4; in a calcium independent manner (By similarity). Isoform 4: interacts with CABP4; suppreses robust calcium-dependent inactivation of channel whithout enhances the hyperpolarized voltage-dependent activation (PubMed:27226626).By similarity1 Publication

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

WithEntry#Exp.IntActNotes
CABP4P57796-12EBI-14063123,EBI-14063133

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

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BioGridi
107232, 1 interactor

Protein interaction database and analysis system

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IntActi
O60840, 3 interactors

STRING: functional protein association networks

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STRINGi
9606.ENSP00000365441

Chemistry databases

BindingDB database of measured binding affinities

More...
BindingDBi
O60840

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
O60840

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
O60840

Database of comparative protein structure models

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ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati79 – 375IAdd BLAST297
Repeati515 – 761IIAdd BLAST247
Repeati858 – 1140IIIAdd BLAST283
Repeati1177 – 1444IVAdd BLAST268

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni395 – 412Binding to the beta subunitBy similarityAdd BLAST18
Regioni1060 – 1150Dihydropyridine bindingBy similarityAdd BLAST91
Regioni1397 – 1463Dihydropyridine bindingBy similarityAdd BLAST67
Regioni1409 – 1452Phenylalkylamine bindingBy similarityAdd BLAST44

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi659 – 665Poly-Leu7
Compositional biasi794 – 799Poly-Glu6
Compositional biasi809 – 825Poly-GluAdd BLAST17
Compositional biasi1121 – 1124Poly-Ile4
Compositional biasi1640 – 1645Poly-Glu6

<p>This subsection of the ‘Family and domains’ section provides general information on the biological role of a domain. The term ‘domain’ is intended here in its wide acceptation, it may be a structural domain, a transmembrane region or a functional domain. Several domains are described in this subsection.<p><a href='/help/domain_cc' target='_top'>More...</a></p>Domaini

Each of the four internal repeats contains five hydrophobic transmembrane segments (S1, S2, S3, S5, S6) and one positively charged transmembrane segment (S4). S4 segments probably represent the voltage-sensor and are characterized by a series of positively charged amino acids at every third position.

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Keywords - Domaini

Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG2301 Eukaryota
ENOG410XNP6 LUCA

Ensembl GeneTree

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GeneTreei
ENSGT00940000159855

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

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HOGENOMi
HOG000231529

The HOVERGEN Database of Homologous Vertebrate Genes

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HOVERGENi
HBG050763

InParanoid: Eukaryotic Ortholog Groups

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InParanoidi
O60840

KEGG Orthology (KO)

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KOi
K04853

Identification of Orthologs from Complete Genome Data

More...
OMAi
CRGRWAG

Database of Orthologous Groups

More...
OrthoDBi
309052at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
O60840

TreeFam database of animal gene trees

More...
TreeFami
TF312805

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.20.120.350, 4 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR031688 CAC1F_C
IPR031649 GPHH_dom
IPR005821 Ion_trans_dom
IPR014873 VDCC_a1su_IQ
IPR030157 VDCC_L_a1F
IPR005446 VDCC_L_a1su
IPR002077 VDCCAlpha1
IPR027359 Volt_channel_dom_sf

The PANTHER Classification System

More...
PANTHERi
PTHR10037:SF184 PTHR10037:SF184, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF08763 Ca_chan_IQ, 1 hit
PF16885 CAC1F_C, 1 hit
PF16905 GPHH, 1 hit
PF00520 Ion_trans, 4 hits

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00167 CACHANNEL
PR01630 LVDCCALPHA1

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01062 Ca_chan_IQ, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (6+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 6 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 6 described isoforms and 1 potential isoform that is computationally mapped.Show allAlign All

Isoform 1 (identifier: O60840-1) [UniParc]FASTAAdd to basket
Also known as: Cav1.4FL1 Publication

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MSESEGGKDT TPEPSPANGA GPGPEWGLCP GPPAVEGESS GASGLGTPKR
60 70 80 90 100
RNQHSKHKTV AVASAQRSPR ALFCLTLANP LRRSCISIVE WKPFDILILL
110 120 130 140 150
TIFANCVALG VYIPFPEDDS NTANHNLEQV EYVFLVIFTV ETVLKIVAYG
160 170 180 190 200
LVLHPSAYIR NGWNLLDFII VVVGLFSVLL EQGPGRPGDA PHTGGKPGGF
210 220 230 240 250
DVKALRAFRV LRPLRLVSGV PSLHIVLNSI MKALVPLLHI ALLVLFVIII
260 270 280 290 300
YAIIGLELFL GRMHKTCYFL GSDMEAEEDP SPCASSGSGR ACTLNQTECR
310 320 330 340 350
GRWPGPNGGI TNFDNFFFAM LTVFQCVTME GWTDVLYWMQ DAMGYELPWV
360 370 380 390 400
YFVSLVIFGS FFVLNLVLGV LSGEFSKERE KAKARGDFQK QREKQQMEED
410 420 430 440 450
LRGYLDWITQ AEELDMEDPS ADDNLGSMAE EGRAGHRPQL AELTNRRRGR
460 470 480 490 500
LRWFSHSTRS THSTSSHASL PASDTGSMTE TQGDEDEEEG ALASCTRCLN
510 520 530 540 550
KIMKTRVCRR LRRANRVLRA RCRRAVKSNA CYWAVLLLVF LNTLTIASEH
560 570 580 590 600
HGQPVWLTQI QEYANKVLLC LFTVEMLLKL YGLGPSAYVS SFFNRFDCFV
610 620 630 640 650
VCGGILETTL VEVGAMQPLG ISVLRCVRLL RIFKVTRHWA SLSNLVASLL
660 670 680 690 700
NSMKSIASLL LLLFLFIIIF SLLGMQLFGG KFNFDQTHTK RSTFDTFPQA
710 720 730 740 750
LLTVFQILTG EDWNVVMYDG IMAYGGPFFP GMLVCIYFII LFICGNYILL
760 770 780 790 800
NVFLAIAVDN LASGDAGTAK DKGGEKSNEK DLPQENEGLV PGVEKEEEEG
810 820 830 840 850
ARREGADMEE EEEEEEEEEE EEEEEGAGGV ELLQEVVPKE KVVPIPEGSA
860 870 880 890 900
FFCLSQTNPL RKGCHTLIHH HVFTNLILVF IILSSVSLAA EDPIRAHSFR
910 920 930 940 950
NHILGYFDYA FTSIFTVEIL LKMTVFGAFL HRGSFCRSWF NMLDLLVVSV
960 970 980 990 1000
SLISFGIHSS AISVVKILRV LRVLRPLRAI NRAKGLKHVV QCVFVAIRTI
1010 1020 1030 1040 1050
GNIMIVTTLL QFMFACIGVQ LFKGKFYTCT DEAKHTPQEC KGSFLVYPDG
1060 1070 1080 1090 1100
DVSRPLVRER LWVNSDFNFD NVLSAMMALF TVSTFEGWPA LLYKAIDAYA
1110 1120 1130 1140 1150
EDHGPIYNYR VEISVFFIVY IIIIAFFMMN IFVGFVIITF RAQGEQEYQN
1160 1170 1180 1190 1200
CELDKNQRQC VEYALKAQPL RRYIPKNPHQ YRVWATVNSA AFEYLMFLLI
1210 1220 1230 1240 1250
LLNTVALAMQ HYEQTAPFNY AMDILNMVFT GLFTIEMVLK IIAFKPKHYF
1260 1270 1280 1290 1300
TDAWNTFDAL IVVGSIVDIA VTEVNNGGHL GESSEDSSRI SITFFRLFRV
1310 1320 1330 1340 1350
MRLVKLLSKG EGIRTLLWTF IKSFQALPYV ALLIAMIFFI YAVIGMQMFG
1360 1370 1380 1390 1400
KVALQDGTQI NRNNNFQTFP QAVLLLFRCA TGEAWQEIML ASLPGNRCDP
1410 1420 1430 1440 1450
ESDFGPGEEF TCGSNFAIAY FISFFMLCAF LIINLFVAVI MDNFDYLTRD
1460 1470 1480 1490 1500
WSILGPHHLD EFKRIWSEYD PGAKGRIKHL DVVALLRRIQ PPLGFGKLCP
1510 1520 1530 1540 1550
HRVACKRLVA MNMPLNSDGT VTFNATLFAL VRTSLKIKTE GNLEQANQEL
1560 1570 1580 1590 1600
RIVIKKIWKR MKQKLLDEVI PPPDEEEVTV GKFYATFLIQ DYFRKFRRRK
1610 1620 1630 1640 1650
EKGLLGNDAA PSTSSALQAG LRSLQDLGPE MRQALTCDTE EEEEEGQEGV
1660 1670 1680 1690 1700
EEEDEKDLET NKATMVSQPS ARRGSGISVS LPVGDRLPDS LSFGPSDDDR
1710 1720 1730 1740 1750
GTPTSSQPSV PQAGSNTHRR GSGALIFTIP EEGNSQPKGT KGQNKQDEDE
1760 1770 1780 1790 1800
EVPDRLSYLD EQAGTPPCSV LLPPHRAQRY MDGHLVPRRR LLPPTPAGRK
1810 1820 1830 1840 1850
PSFTIQCLQR QGSCEDLPIP GTYHRGRNSG PNRAQGSWAT PPQRGRLLYA
1860 1870 1880 1890 1900
PLLLVEEGAA GEGYLGRSSG PLRTFTCLHV PGTHSDPSHG KRGSADSLVE
1910 1920 1930 1940 1950
AVLISEGLGL FARDPRFVAL AKQEIADACR LTLDEMDNAA SDLLAQGTSS
1960 1970
LYSDEESILS RFDEEDLGDE MACVHAL
Length:1,977
Mass (Da):220,678
Last modified:April 14, 2009 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i354336550C6D8E73
GO
Isoform 2 (identifier: O60840-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     427-437: Missing.

Show »
Length:1,966
Mass (Da):219,496
Checksum:iFEB47E19FA57E31D
GO
Isoform 3 (identifier: O60840-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     9-86: DTTPEPSPAN...LANPLRRSCI → GERILPSLQTLGA

Show »
Length:1,912
Mass (Da):214,033
Checksum:i0E2C45C8E4156E0D
GO
Isoform 4 (identifier: O60840-5) [UniParc]FASTAAdd to basket
Also known as: Cav1.4Deltaex p45,471 Publication

The sequence of this isoform differs from the canonical sequence as follows:
     1756-1775: Missing.
     1836-1901: Missing.

Show »
Length:1,891
Mass (Da):211,691
Checksum:i1CA7887FD0D2B6EC
GO
Isoform 5 (identifier: O60840-6) [UniParc]FASTAAdd to basket
Also known as: Cav1.4Deltaex p451 Publication

The sequence of this isoform differs from the canonical sequence as follows:
     1756-1775: Missing.

Show »
Length:1,957
Mass (Da):218,559
Checksum:i3257113F2AFF98BA
GO
Isoform 6 (identifier: O60840-7) [UniParc]FASTAAdd to basket
Also known as: Cav1.4Deltaex 471 Publication

The sequence of this isoform differs from the canonical sequence as follows:
     1836-1901: Missing.

Show »
Length:1,911
Mass (Da):213,810
Checksum:i88A83ECD1F6D0861
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
H7C549H7C549_HUMAN
Voltage-dependent L-type calcium ch...
CACNA1F
116Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAB92359 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti1236E → V in AAB92359 (PubMed:9344658).Curated1
Sequence conflicti1860A → G in AAB92359 (PubMed:9344658).Curated1

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_03080714P → L. Corresponds to variant dbSNP:rs6520408EnsemblClinVar.1
Natural variantiVAR_03080874C → R in CSNB2A. 1 Publication1
Natural variantiVAR_030809150G → R in CSNB2A. 1 Publication1
Natural variantiVAR_030810229S → P in CSNB2A. 1 Publication1
Natural variantiVAR_030811261G → R in CSNB2A. 1 Publication1
Natural variantiVAR_001504369G → D in CSNB2A. 3 PublicationsCorresponds to variant dbSNP:rs122456133EnsemblClinVar.1
Natural variantiVAR_001505519R → Q in CSNB2A. 1 PublicationCorresponds to variant dbSNP:rs34162630EnsemblClinVar.1
Natural variantiVAR_071433603G → R in AIED and CSNB2A. 1 PublicationCorresponds to variant dbSNP:rs201654095Ensembl.1
Natural variantiVAR_030812635V → I in CSNB2A. 1 PublicationCorresponds to variant dbSNP:rs141010716EnsemblClinVar.1
Natural variantiVAR_030813674G → D in CSNB2A. 1 Publication1
Natural variantiVAR_029376746N → T1 PublicationCorresponds to variant dbSNP:rs141159097EnsemblClinVar.1
Natural variantiVAR_030814753F → C in CSNB2A. 1 Publication1
Natural variantiVAR_030815756I → T in CSNB2A; increases the number of mutant channels open at physiologic membrane potential and allows for persistent Ca(2+) entry due to reduced channel inactivation resulting in a gain-of-function defect. 1 PublicationCorresponds to variant dbSNP:rs122456136EnsemblClinVar.1
Natural variantiVAR_030816860L → P in CSNB2A. 1 Publication1
Natural variantiVAR_030817928A → D in CSNB2A. 1 Publication1
Natural variantiVAR_0308181018G → R in CSNB2A. 1 PublicationCorresponds to variant dbSNP:rs1249437161Ensembl.1
Natural variantiVAR_0015061060R → W in CSNB2A. 2 Publications1
Natural variantiVAR_0308191079L → P in CSNB2A. 1 Publication1
Natural variantiVAR_0556621259A → T. Corresponds to variant dbSNP:rs34308720Ensembl.1
Natural variantiVAR_0318221270A → T. Corresponds to variant dbSNP:rs34308720Ensembl.1
Natural variantiVAR_0015071375L → H in CSNB2A. 1 Publication1
Natural variantiVAR_0308201499C → R in CSNB2A. 1 Publication1
Natural variantiVAR_0308211500P → R in CSNB2A. 1 Publication1
Natural variantiVAR_0308221508L → P in CSNB2A. 1 Publication1
Natural variantiVAR_0548181930R → H. Corresponds to variant dbSNP:rs33910054EnsemblClinVar.1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting. The information stored in this subsection is used to automatically construct alternative protein sequence(s) for display.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0451729 – 86DTTPE…RRSCI → GERILPSLQTLGA in isoform 3. 1 PublicationAdd BLAST78
Alternative sequenceiVSP_036785427 – 437Missing in isoform 2. 2 PublicationsAdd BLAST11
Alternative sequenceiVSP_0589231756 – 1775Missing in isoform 4 and isoform 5. 1 PublicationAdd BLAST20
Alternative sequenceiVSP_0589241836 – 1901Missing in isoform 4 and isoform 6. 1 PublicationAdd BLAST66

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AJ006216 Genomic DNA Translation: CAA06916.1
AF067227 mRNA Translation: AAD03587.1
AJ224874 mRNA Translation: CAA12175.1
AF201304 mRNA Translation: AAF15290.1
JF701915 mRNA Translation: AED89557.1
AF196779 Genomic DNA No translation available.
AF235097 Genomic DNA No translation available.
U93305 Genomic DNA Translation: AAB92359.1 Sequence problems.

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS35253.1 [O60840-1]
CCDS59166.1 [O60840-4]
CCDS59167.1 [O60840-2]

NCBI Reference Sequences

More...
RefSeqi
NP_001243718.1, NM_001256789.2 [O60840-2]
NP_001243719.1, NM_001256790.2 [O60840-4]
NP_005174.2, NM_005183.3 [O60840-1]

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
Hs.632799

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENST00000323022; ENSP00000321618; ENSG00000102001 [O60840-2]
ENST00000376251; ENSP00000365427; ENSG00000102001 [O60840-4]
ENST00000376265; ENSP00000365441; ENSG00000102001 [O60840-1]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
778

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
hsa:778

UCSC genome browser

More...
UCSCi
uc004dnb.3 human [O60840-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

<p>This subsection of the <a href="http://www.uniprot.org/manual/cross_references_section">Cross-references</a> section provides links to various web resources that are relevant for a specific protein.<p><a href='/help/web_resource' target='_top'>More...</a></p>Web resourcesi

Mutations of the CCNA1F gene

Retina International's Scientific Newsletter

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ006216 Genomic DNA Translation: CAA06916.1
AF067227 mRNA Translation: AAD03587.1
AJ224874 mRNA Translation: CAA12175.1
AF201304 mRNA Translation: AAF15290.1
JF701915 mRNA Translation: AED89557.1
AF196779 Genomic DNA No translation available.
AF235097 Genomic DNA No translation available.
U93305 Genomic DNA Translation: AAB92359.1 Sequence problems.
CCDSiCCDS35253.1 [O60840-1]
CCDS59166.1 [O60840-4]
CCDS59167.1 [O60840-2]
RefSeqiNP_001243718.1, NM_001256789.2 [O60840-2]
NP_001243719.1, NM_001256790.2 [O60840-4]
NP_005174.2, NM_005183.3 [O60840-1]
UniGeneiHs.632799

3D structure databases

ProteinModelPortaliO60840
SMRiO60840
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi107232, 1 interactor
IntActiO60840, 3 interactors
STRINGi9606.ENSP00000365441

Chemistry databases

BindingDBiO60840
ChEMBLiCHEMBL2363032
DrugBankiDB00568 Cinnarizine
DB04920 Clevidipine
DB04855 Dronedarone
DB01388 Mibefradil
DB00393 Nimodipine
DB00421 Spironolactone
DB00661 Verapamil
GuidetoPHARMACOLOGYi531

Protein family/group databases

TCDBi1.A.1.11.11 the voltage-gated ion channel (vic) superfamily

PTM databases

iPTMnetiO60840
PhosphoSitePlusiO60840

Polymorphism and mutation databases

BioMutaiCACNA1F

Proteomic databases

jPOSTiO60840
PaxDbiO60840
PeptideAtlasiO60840
PRIDEiO60840
ProteomicsDBi49626
49627 [O60840-2]

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000323022; ENSP00000321618; ENSG00000102001 [O60840-2]
ENST00000376251; ENSP00000365427; ENSG00000102001 [O60840-4]
ENST00000376265; ENSP00000365441; ENSG00000102001 [O60840-1]
GeneIDi778
KEGGihsa:778
UCSCiuc004dnb.3 human [O60840-1]

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
778
DisGeNETi778
EuPathDBiHostDB:ENSG00000102001.12

GeneCards: human genes, protein and diseases

More...
GeneCardsi
CACNA1F
GeneReviewsiCACNA1F
HGNCiHGNC:1393 CACNA1F
HPAiHPA068379
MalaCardsiCACNA1F
MIMi300071 phenotype
300110 gene
300476 phenotype
300600 phenotype
neXtProtiNX_O60840
OpenTargetsiENSG00000102001
Orphaneti178333 Aaland Islands eye disease
1872 Cone rod dystrophy
215 Congenital stationary night blindness
PharmGKBiPA26010

GenAtlas: human gene database

More...
GenAtlasi
Search...

Phylogenomic databases

eggNOGiKOG2301 Eukaryota
ENOG410XNP6 LUCA
GeneTreeiENSGT00940000159855
HOGENOMiHOG000231529
HOVERGENiHBG050763
InParanoidiO60840
KOiK04853
OMAiCRGRWAG
OrthoDBi309052at2759
PhylomeDBiO60840
TreeFamiTF312805

Enzyme and pathway databases

ReactomeiR-HSA-5576892 Phase 0 - rapid depolarisation
R-HSA-5576893 Phase 2 - plateau phase

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...
ChiTaRSi
CACNA1F human

The Gene Wiki collection of pages on human genes and proteins

More...
GeneWikii
Cav1.4

Database of phenotypes from RNA interference screens in Drosophila and Homo sapiens

More...
GenomeRNAii
778

Protein Ontology

More...
PROi
PR:O60840

The Stanford Online Universal Resource for Clones and ESTs

More...
SOURCEi
Search...

Gene expression databases

BgeeiENSG00000102001 Expressed in 70 organ(s), highest expression level in right lung
CleanExiHS_CACNA1F
ExpressionAtlasiO60840 baseline and differential
GenevisibleiO60840 HS

Family and domain databases

Gene3Di1.20.120.350, 4 hits
InterProiView protein in InterPro
IPR031688 CAC1F_C
IPR031649 GPHH_dom
IPR005821 Ion_trans_dom
IPR014873 VDCC_a1su_IQ
IPR030157 VDCC_L_a1F
IPR005446 VDCC_L_a1su
IPR002077 VDCCAlpha1
IPR027359 Volt_channel_dom_sf
PANTHERiPTHR10037:SF184 PTHR10037:SF184, 1 hit
PfamiView protein in Pfam
PF08763 Ca_chan_IQ, 1 hit
PF16885 CAC1F_C, 1 hit
PF16905 GPHH, 1 hit
PF00520 Ion_trans, 4 hits
PRINTSiPR00167 CACHANNEL
PR01630 LVDCCALPHA1
SMARTiView protein in SMART
SM01062 Ca_chan_IQ, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiCAC1F_HUMAN
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: O60840
Secondary accession number(s): A6NI29
, F5CIQ9, O43901, O95226, Q9UHB1
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 15, 1999
Last sequence update: April 14, 2009
Last modified: January 16, 2019
This is version 189 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Human chromosome X
    Human chromosome X: entries, gene names and cross-references to MIM
  3. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  4. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  5. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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