We are aiming to switch to the new UniProt website on Monday, May 9. Please explore and share your feedback.
Take me to the new website.
UniProtKB - O60182 (RFC1_SCHPO)
Protein
Replication factor C subunit 1
Gene
rfc1
Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Functioni
The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins PCNA and activator 1. Subunit 1 is essential for cell cycle progression. It may associate with components of the DNA replication machinery and serve to enhance the efficiency of DNA replication.
1 PublicationSites
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Binding sitei | 362 | ATP; via carbonyl oxygenBy similarity | 1 | |
Binding sitei | 374 | ATP; via amide nitrogen and carbonyl oxygenBy similarity | 1 | |
Binding sitei | 519 | ATPBy similarity | 1 |
Regions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Nucleotide bindingi | 416 – 423 | ATPSequence analysis | 8 |
GO - Molecular functioni
- ATP binding Source: UniProtKB-KW
- ATP hydrolysis activity Source: InterPro
- chromatin binding Source: PomBase
- DNA binding Source: GO_Central
- DNA clamp loader activity Source: InterPro
GO - Biological processi
- cell division Source: UniProtKB-KW
- DNA strand elongation involved in DNA replication Source: PomBase
- mitotic DNA replication leading strand elongation Source: PomBase
- UV-damage excision repair Source: PomBase
Keywordsi
Molecular function | DNA-binding |
Biological process | Cell cycle, Cell division, DNA replication |
Ligand | ATP-binding, Nucleotide-binding |
Enzyme and pathway databases
Reactomei | R-SPO-110312, Translesion synthesis by REV1 R-SPO-110314, Recognition of DNA damage by PCNA-containing replication complex R-SPO-110320, Translesion Synthesis by POLH R-SPO-5651801, PCNA-Dependent Long Patch Base Excision Repair R-SPO-5655862, Translesion synthesis by POLK R-SPO-5656121, Translesion synthesis by POLI R-SPO-5656169, Termination of translesion DNA synthesis R-SPO-5696397, Gap-filling DNA repair synthesis and ligation in GG-NER R-SPO-5696400, Dual Incision in GG-NER R-SPO-6782135, Dual incision in TC-NER R-SPO-6782210, Gap-filling DNA repair synthesis and ligation in TC-NER R-SPO-69091, Polymerase switching |
Names & Taxonomyi
Protein namesi | Recommended name: Replication factor C subunit 1Short name: Replication factor C1 |
Gene namesi | Name:rfc1 ORF Names:SPBC23E6.07c |
Organismi | Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) |
Taxonomic identifieri | 284812 [NCBI] |
Taxonomic lineagei | Eukaryota › Fungi › Dikarya › Ascomycota › Taphrinomycotina › Schizosaccharomycetes › Schizosaccharomycetales › Schizosaccharomycetaceae › Schizosaccharomyces › |
Proteomesi |
|
Organism-specific databases
PomBasei | SPBC23E6.07c, rfc1 |
VEuPathDBi | FungiDB:SPBC23E6.07c |
Subcellular locationi
Nucleus
- nucleolus 1 Publication
Nucleus
- nuclear DNA replication factor C complex Source: PomBase
- nucleolus Source: UniProtKB-SubCell
- nucleus Source: PomBase
Other locations
- chromatin Source: PomBase
Keywords - Cellular componenti
NucleusPTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000121775 | 1 – 934 | Replication factor C subunit 1Add BLAST | 934 |
Amino acid modifications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Modified residuei | 27 | Phosphoserine1 Publication | 1 |
Keywords - PTMi
PhosphoproteinProteomic databases
MaxQBi | O60182 |
PaxDbi | O60182 |
PTM databases
iPTMneti | O60182 |
Interactioni
Subunit structurei
Heteropentamer of subunits rfc1, rfc2, rfc3, rfc4 and rfc5 that forms a complex (RFC) with PCNA in the presence of ATP.
Interacts with cdc24.
1 PublicationProtein-protein interaction databases
BioGRIDi | 276954, 11 interactors |
ComplexPortali | CPX-546, DNA replication factor C complex |
IntActi | O60182, 1 interactor |
STRINGi | 4896.SPBC23E6.07c.1 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 236 – 326 | BRCTPROSITE-ProRule annotationAdd BLAST | 91 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1 – 190 | DisorderedSequence analysisAdd BLAST | 190 | |
Regioni | 876 – 934 | DisorderedSequence analysisAdd BLAST | 59 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 37 – 86 | Basic and acidic residuesSequence analysisAdd BLAST | 50 | |
Compositional biasi | 93 – 120 | Polar residuesSequence analysisAdd BLAST | 28 | |
Compositional biasi | 132 – 146 | Polar residuesSequence analysisAdd BLAST | 15 | |
Compositional biasi | 158 – 190 | Polar residuesSequence analysisAdd BLAST | 33 | |
Compositional biasi | 876 – 891 | Acidic residuesSequence analysisAdd BLAST | 16 |
Sequence similaritiesi
Belongs to the activator 1 large subunit family.Curated
Phylogenomic databases
eggNOGi | KOG1968, Eukaryota |
HOGENOMi | CLU_003574_1_1_1 |
InParanoidi | O60182 |
OMAi | PVGAENC |
PhylomeDBi | O60182 |
Family and domain databases
Gene3Di | 3.40.50.10190, 1 hit 3.40.50.300, 1 hit |
InterProi | View protein in InterPro IPR003593, AAA+_ATPase IPR003959, ATPase_AAA_core IPR001357, BRCT_dom IPR036420, BRCT_dom_sf IPR008921, DNA_pol3_clamp-load_cplx_C IPR013725, DNA_replication_fac_RFC1_C IPR027417, P-loop_NTPase IPR012178, RFC1 |
Pfami | View protein in Pfam PF00004, AAA, 1 hit PF00533, BRCT, 1 hit PF08519, RFC1, 1 hit |
PIRSFi | PIRSF036578, RFC1, 1 hit |
SMARTi | View protein in SMART SM00382, AAA, 1 hit SM00292, BRCT, 1 hit |
SUPFAMi | SSF48019, SSF48019, 1 hit SSF52113, SSF52113, 1 hit SSF52540, SSF52540, 1 hit |
PROSITEi | View protein in PROSITE PS50172, BRCT, 1 hit |
i Sequence
Sequence statusi: Complete.
O60182-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MSNSDIRSFF GGGNAQKKPK VSPTPTSPKP KRSLKKKRIV LSDDEDGTIE
60 70 80 90 100
NSKVPASKSK VQKRNESEDI SHSLPSIVHE DDKLVGSDGV STTPDEYFEQ
110 120 130 140 150
QSTRSRSKPR IISNKETTTS KDVVHPVKTE NFANDLDTTS DSKPVVHQTR
160 170 180 190 200
ATRKPAQPKA EKSTTSKSKS HTTTATTHTS RSSKSKGLPR FSDEVSQALK
210 220 230 240 250
NVPLIDVDSM GVMAPGTFYE RAATTQTPGS KPVPEGNSDC LSGISFVITG
260 270 280 290 300
ILETLTRQEA TDLIKQYGGK VTGAPSVRTD FILLGENAGP RKVETIKQHK
310 320 330 340 350
IPAINEDGLF YLITHLPASG GTGAAAQAAQ QKKEQEEKKI LETVARMDDS
360 370 380 390 400
NKKESQPSQI WTSKYAPTSL KDICGNKGVV QKLQKWLQDY HKNRKSNFNK
410 420 430 440 450
PGPDGLGLYK AVLLSGPPGI GKTTAAHLVA KLEGYDVLEL NASDTRSKRL
460 470 480 490 500
LDEQLFGVTD SQSLAGYFGT KANPVDMAKS RLVLIMDEID GMSSGDRGGV
510 520 530 540 550
GQLNMIIKKS MIPIICICND RAHPKLRPLD RTTFDLRFRR PDANSMRSRI
560 570 580 590 600
MSIAYREGLK LSPQAVDQLV QGTQSDMRQI INLLSTYKLS CSEMTPQNSQ
610 620 630 640 650
AVIKNSEKHI VMKPWDICSR YLHGGMFHPS SKSTINDKLE LYFNDHEFSY
660 670 680 690 700
LMVQENYLNT TPDRIRQEPP KMSHLKHLEL ISSAANSFSD SDLVDSMIHG
710 720 730 740 750
PQQHWSLMPT HALMSCVRPA SFVAGSGSRQ IRFTNWLGNN SKTNKLYRML
760 770 780 790 800
REIQVHMRLK VSANKLDLRQ HYIPILYESL PVKLSTGHSD VVPEIIELMD
810 820 830 840 850
EYYLNREDFD SITELVLPAD AGEKLMKTIP TAAKSAFTRK YNSSSHPIAF
860 870 880 890 900
FGSSDVLPMK GSAQREVPDV EDAIEAEDEM LEEASDSEAA NEEDIDLSKD
910 920 930
KFISVPKKPK KRTKAKAEAS SSSSTSRRSR KKTA
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CU329671 Genomic DNA Translation: CAA18875.1 AB027931 Genomic DNA Translation: BAA87235.1 |
PIRi | T39941 |
RefSeqi | NP_596607.1, NM_001022528.2 |
Genome annotation databases
EnsemblFungii | SPBC23E6.07c.1; SPBC23E6.07c.1:pep; SPBC23E6.07c |
GeneIDi | 2540426 |
KEGGi | spo:SPBC23E6.07c |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CU329671 Genomic DNA Translation: CAA18875.1 AB027931 Genomic DNA Translation: BAA87235.1 |
PIRi | T39941 |
RefSeqi | NP_596607.1, NM_001022528.2 |
3D structure databases
SMRi | O60182 |
ModBasei | Search... |
Protein-protein interaction databases
BioGRIDi | 276954, 11 interactors |
ComplexPortali | CPX-546, DNA replication factor C complex |
IntActi | O60182, 1 interactor |
STRINGi | 4896.SPBC23E6.07c.1 |
PTM databases
iPTMneti | O60182 |
Proteomic databases
MaxQBi | O60182 |
PaxDbi | O60182 |
Genome annotation databases
EnsemblFungii | SPBC23E6.07c.1; SPBC23E6.07c.1:pep; SPBC23E6.07c |
GeneIDi | 2540426 |
KEGGi | spo:SPBC23E6.07c |
Organism-specific databases
PomBasei | SPBC23E6.07c, rfc1 |
VEuPathDBi | FungiDB:SPBC23E6.07c |
Phylogenomic databases
eggNOGi | KOG1968, Eukaryota |
HOGENOMi | CLU_003574_1_1_1 |
InParanoidi | O60182 |
OMAi | PVGAENC |
PhylomeDBi | O60182 |
Enzyme and pathway databases
Reactomei | R-SPO-110312, Translesion synthesis by REV1 R-SPO-110314, Recognition of DNA damage by PCNA-containing replication complex R-SPO-110320, Translesion Synthesis by POLH R-SPO-5651801, PCNA-Dependent Long Patch Base Excision Repair R-SPO-5655862, Translesion synthesis by POLK R-SPO-5656121, Translesion synthesis by POLI R-SPO-5656169, Termination of translesion DNA synthesis R-SPO-5696397, Gap-filling DNA repair synthesis and ligation in GG-NER R-SPO-5696400, Dual Incision in GG-NER R-SPO-6782135, Dual incision in TC-NER R-SPO-6782210, Gap-filling DNA repair synthesis and ligation in TC-NER R-SPO-69091, Polymerase switching |
Miscellaneous databases
PROi | PR:O60182 |
Family and domain databases
Gene3Di | 3.40.50.10190, 1 hit 3.40.50.300, 1 hit |
InterProi | View protein in InterPro IPR003593, AAA+_ATPase IPR003959, ATPase_AAA_core IPR001357, BRCT_dom IPR036420, BRCT_dom_sf IPR008921, DNA_pol3_clamp-load_cplx_C IPR013725, DNA_replication_fac_RFC1_C IPR027417, P-loop_NTPase IPR012178, RFC1 |
Pfami | View protein in Pfam PF00004, AAA, 1 hit PF00533, BRCT, 1 hit PF08519, RFC1, 1 hit |
PIRSFi | PIRSF036578, RFC1, 1 hit |
SMARTi | View protein in SMART SM00382, AAA, 1 hit SM00292, BRCT, 1 hit |
SUPFAMi | SSF48019, SSF48019, 1 hit SSF52113, SSF52113, 1 hit SSF52540, SSF52540, 1 hit |
PROSITEi | View protein in PROSITE PS50172, BRCT, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | RFC1_SCHPO | |
Accessioni | O60182Primary (citable) accession number: O60182 Secondary accession number(s): Q9US97 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | May 16, 2003 |
Last sequence update: | August 1, 1998 | |
Last modified: | February 23, 2022 | |
This is version 145 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Fungal Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Schizosaccharomyces pombe
Schizosaccharomyces pombe: entries and gene names - SIMILARITY comments
Index of protein domains and families