Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Entry version 43 (12 Aug 2020)
Sequence version 1 (01 Jun 1998)
Previous versions | rss
Help videoAdd a publicationFeedback
Protein

Major inner capsid protein VP3

Gene
N/A
Organism
Rice ragged stunt virus (isolate Thailand) (RRSV)
Status
Reviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Capsid protein self-assembles to form an icosahedral capsid with a pseudo T=2 symmetry, about 70 nm in diameter, and consisting of 120 capsid proteins. The capsid encapsulates the genomic RNA (By similarity).By similarity

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Major inner capsid protein VP3
Alternative name(s):
Major core capsid protein VP3
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiRice ragged stunt virus (isolate Thailand) (RRSV)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri649603 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiVirusesRiboviriaOrthornaviraeDuplornaviricotaResentoviricetesReoviralesReoviridaeSpinareovirinaeOryzavirus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section only exists in viral entries and indicates the host(s) either as a specific organism or taxonomic group of organisms that are susceptible to be infected by a virus.<p><a href='/help/virus_host' target='_top'>More...</a></p>Virus hostiOryza latifolia [TaxID: 4534]
Oryza nivara (Indian wild rice) (Oryza sativa f. spontanea) [TaxID: 4536]
Oryza rufipogon (Brownbeard rice) (Asian wild rice) [TaxID: 4529]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000348 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Capsid protein, Inner capsid protein, T=2 icosahedral capsid protein, Virion

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004036311 – 1173Major inner capsid protein VP3Add BLAST1173

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
O56044

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

O56044-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSNLPKPASH FEPEKNVDDK GNVTGSAPPV SKDTPTQQAS VSLPNQEEPT
60 70 80 90 100
QQTLVTTELP TKPDYNDLLL KASDERLLLV KEAKPQTLRF YASPTGLTAS
110 120 130 140 150
GFSIVTSPTS SYEQHAIDIF PYNCPVDKIV PAFTLEQIKI TNDVLSSAQQ
160 170 180 190 200
SYLSRIPHDT SLVKLNEIEV VTGGSRDLFS LGTGYVMVVP NAEFFEGANL
210 220 230 240 250
KFVYGVPMAD IIFSKLTSQS AADYAFLDRS RIASGFIMFA LHFALRTNVN
260 270 280 290 300
LVVTKDNSAR FASELSYSRP MSFVQGKKIV LPVQPHVCFA EGNSLMRYLD
310 320 330 340 350
TALEGKYTQG VTYKYGRERI ITETKEGGPI TEITYLNIDN VTAQALGITA
360 370 380 390 400
HVIGIDRYRE DNVKRALLAY SLSGSTVDLM QSDESERMFG RMLSPQQELS
410 420 430 440 450
YLLVGAALSQ DVYKTILRAN LDAFMMFGTV MPSLSDSLAK IPADAGNQQI
460 470 480 490 500
ISLIRERQSV SGFENAMEYL AMQVTPPLIW PCVISREVNV TGLSLLIMLL
510 520 530 540 550
EYILFFIFYP SLAKKCGAGL CNNFYKLVFA LSNSEWSQFV TRVGYDGTLG
560 570 580 590 600
NSIPITDEDY WSNARRPALF TTDLSQFRLL GLIQRLIAPI GEHREHVKAQ
610 620 630 640 650
AAEFPRLKAR TEYWNPYPNP GAQHVEQTIF KARLLQAFDE TLTLVKDLNQ
660 670 680 690 700
TGQLVSKTLM AGVAKVFNTC KIKLRYHGVG FGRDIGMPLA YLRDRKINFY
710 720 730 740 750
HDYDGRLDTP FPNQMMLVSA SQSPHDHKIP IELRRKGQIV LETGVVWTLV
760 770 780 790 800
LGLQFPSHQF DEDMTNDPIC KFRAPSPGEE LGKDDTIIAM CANACVPFSI
810 820 830 840 850
AAGIISESYA DGGMKEIKEL LSGSLSSTEF RNLISCIQTA MQGSGFNVGR
860 870 880 890 900
NRDVFRQNET VDLRFIEPKV RYVENELTII APTPQDPPII RGDLQLIPEG
910 920 930 940 950
LMPRFRLGLT AIADSSSEYS RLRKGLYLAR CEVDVEAPNN ALPLDLRDYV
960 970 980 990 1000
EVEYSHDLFQ VRRIQTKQAL GIFYQGEFYY RPALVPKMLI VVNTSEEMEP
1010 1020 1030 1040 1050
SYQEFFMQCL EERRIVIKLP KMYFLSRIVC THSIQRPDER DAVLGLLAVR
1060 1070 1080 1090 1100
NDQIPLVTFY DTEQVDPTIQ FDGLASGSKS KFIWPISSID QNVVVRALGA
1110 1120 1130 1140 1150
SGSTAPIGFA APTDSMCDSG SIDDVGNLTT GAGVLKDPRV ISLTNGVINY
1160 1170
TERANLTGRV LYRYRPAYAL DSY
Length:1,173
Mass (Da):130,853
Last modified:June 1, 1998 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i9E863FAC66A8EB3C
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF020336 Genomic RNA Translation: AAC04674.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T08610

NCBI Reference Sequences

More...
RefSeqi
NP_620516.1, NC_003751.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
991197

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
vg:991197

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF020336 Genomic RNA Translation: AAC04674.1
PIRiT08610
RefSeqiNP_620516.1, NC_003751.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Proteomic databases

PRIDEiO56044

Genome annotation databases

GeneIDi991197
KEGGivg:991197

Family and domain databases

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiCAPSD_RRSVT
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: O56044
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 11, 2011
Last sequence update: June 1, 1998
Last modified: August 12, 2020
This is version 43 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again