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Protein

Ectodysplasin-A

Gene

Eda

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Cytokine which is involved in epithelial-mesenchymal signaling during morphogenesis of ectodermal organs. Functions as a ligand activating the DEATH-domain containing receptors EDAR and EDA2R. Isoform TAA binds only to the receptor EDAR, while isoform TA-A2 binds exclusively to the receptor EDA2R (By similarity). May also play a role in cell adhesion (PubMed:10534613).By similarity1 Publication
Isoform TAA binds only to the receptor EDAR, while isoform TA-A2 binds exclusively to the receptor EDA2R.By similarity
Isoform TA-A2 binds exclusively to the receptor EDA2R.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDevelopmental protein
Biological processDifferentiation

Enzyme and pathway databases

ReactomeiR-MMU-5669034 TNFs bind their physiological receptors

Names & Taxonomyi

Protein namesi
Recommended name:
Ectodysplasin-A
Alternative name(s):
EDA protein homolog
Tabby protein
Cleaved into the following 2 chains:
Gene namesi
Name:Eda
Synonyms:Ed1, Ta
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome X

Organism-specific databases

MGIiMGI:1195272 Eda

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 41CytoplasmicSequence analysisAdd BLAST41
Transmembranei42 – 62Helical; Signal-anchor for type II membrane proteinSequence analysisAdd BLAST21
Topological domaini63 – 391ExtracellularSequence analysisAdd BLAST329

Keywords - Cellular componenti

Cell membrane, Membrane, Secreted

Pathology & Biotechi

Involvement in diseasei

Defects in Eda are the cause of the tabby phenotype in mice (the equivalent of anhidrotic ectodermal dysplasia in humans). The disease is characterized by sparse hair (atrichosis or hypotrichosis), abnormal or missing teeth and the inability to sweat due to the absence of sweat glands.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000345401 – 391Ectodysplasin-A, membrane formAdd BLAST391
ChainiPRO_0000034541160 – 391Ectodysplasin-A, secreted formBy similarityAdd BLAST232

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi313N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi372N-linked (GlcNAc...) asparagineSequence analysis1

Post-translational modificationi

N-glycosylated.1 Publication
Processing by furin produces a secreted form.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sitei159 – 160Cleavage; by furinBy similarity2

Keywords - PTMi

Cleavage on pair of basic residues, Glycoprotein

Proteomic databases

PaxDbiO54693
PRIDEiO54693

PTM databases

PhosphoSitePlusiO54693

Expressioni

Gene expression databases

BgeeiENSMUSG00000059327 Expressed in 172 organ(s), highest expression level in remnant of Rathke's pouch
CleanExiMM_EDA
ExpressionAtlasiO54693 baseline and differential
GenevisibleiO54693 MM

Interactioni

Subunit structurei

Homotrimer. The homotrimers may then dimerize and form higher-order oligomers.1 Publication

GO - Molecular functioni

Protein-protein interaction databases

BioGridi199371, 1 interactor
STRINGi10090.ENSMUSP00000109409

Structurei

3D structure databases

ProteinModelPortaliO54693
SMRiO54693
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini180 – 229Collagen-likeAdd BLAST50

Sequence similaritiesi

Belongs to the tumor necrosis factor family.Curated

Keywords - Domaini

Collagen, Signal-anchor, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IH6U Eukaryota
ENOG41121ZD LUCA
GeneTreeiENSGT00730000111220
HOGENOMiHOG000231318
HOVERGENiHBG005564
InParanoidiO54693
KOiK05480
OMAiSIHHRVF
OrthoDBiEOG091G0GBQ
PhylomeDBiO54693
TreeFamiTF332099

Family and domain databases

CDDicd00184 TNF, 1 hit
Gene3Di2.60.120.40, 1 hit
InterProiView protein in InterPro
IPR006052 TNF_dom
IPR008983 Tumour_necrosis_fac-like_dom
PfamiView protein in Pfam
PF00229 TNF, 1 hit
SUPFAMiSSF49842 SSF49842, 1 hit
PROSITEiView protein in PROSITE
PS50049 TNF_2, 1 hit

Sequences (6+)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 6 isoformsi produced by alternative splicing. AlignAdd to basket
Note: Additional isoforms seem to exist.

This entry has 6 described isoforms and 3 potential isoforms that are computationally mapped.Show allAlign All

Isoform TAA (identifier: O54693-1) [UniParc]FASTAAdd to basket
Also known as: A1

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MGYPEVERRE PLPAAAPRER GSQGCGCRGA PARAGEGNSC RLFLGFFGLS
60 70 80 90 100
LALHLLTLCC YLELRSELRR ERGTESRLGG PGAPGTSGTL SSPGSLDPVG
110 120 130 140 150
PITRHLGQPS FQQQPLEPGE DPLPPDSQDR HQMALLNFFF PDEKAYSEEE
160 170 180 190 200
SRRVRRNKRS KSGEGADGPV KNKKKGKKAG PPGPNGPPGP PGPPGPQGPP
210 220 230 240 250
GIPGIPGIPG TTVMGPPGPP GPPGPQGPPG LQGPSGAADK TGTRENQPAV
260 270 280 290 300
VHLQGQGSAI QVKNDLSGGV LNDWSRITMN PKVFKLHPRS GELEVLVDGT
310 320 330 340 350
YFIYSQVEVY YINFTDFASY EVVVDEKPFL QCTRSIETGK TNYNTCYTAG
360 370 380 390
VCLLKARQKI AVKMVHADIS INMSKHTTFF GAIRLGEAPA S
Length:391
Mass (Da):41,603
Last modified:July 15, 1999 - v2
Checksum:iE5ECEDA5BD60DEFF
GO
Isoform TA-A2 (identifier: O54693-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     307-308: Missing.

Show »
Length:389
Mass (Da):41,375
Checksum:iA07C1D59AE9D82AE
GO
Isoform TA-A3 (identifier: O54693-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     265-267: Missing.
     307-308: Missing.

Show »
Length:386
Mass (Da):41,060
Checksum:i1D7ADCB916E4A3F7
GO
Isoform TAB (identifier: O54693-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     169-177: PVKNKKKGK → KSTQVIFFP
     178-391: Missing.

Show »
Length:177
Mass (Da):19,297
Checksum:iD7728EFFEC6C6BF3
GO
Isoform TAC (identifier: O54693-5) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     133-238: MALLNFFFPD...PGLQGPSGAA → VSHLGGAAAL...RAAPGEVWAA
     239-391: Missing.

Show »
Length:220
Mass (Da):23,008
Checksum:iBB7A04B54D3BC159
GO
Isoform TAD (identifier: O54693-6) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     295-308: Missing.

Show »
Length:377
Mass (Da):39,988
Checksum:iE9FB3C2A253881AD
GO

Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q1L2D9Q1L2D9_MOUSE
EDA-A5 isoform
Eda
383Annotation score:
Q1L2D8Q1L2D8_MOUSE
EDA-A5' isoform
Eda
378Annotation score:
Q1L2D6Q1L2D6_MOUSE
EDA-A6 isoform
Eda
351Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti126D → E in AAB88121 (PubMed:9285798).Curated1
Sequence conflicti126D → E in AAB88122 (PubMed:9285798).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_006465133 – 238MALLN…PSGAA → VSHLGGAAALEAPSPARLGG GLGLRAQGTLPLRAKFQGRS WEWAGVLGRGCPGQVVLGSC LGSSRPSPVPWSWKAQPARA APGEVWAA in isoform TAC. 1 PublicationAdd BLAST106
Alternative sequenceiVSP_006466169 – 177PVKNKKKGK → KSTQVIFFP in isoform TAB. 1 Publication9
Alternative sequenceiVSP_006467178 – 391Missing in isoform TAB. 1 PublicationAdd BLAST214
Alternative sequenceiVSP_006468239 – 391Missing in isoform TAC. 1 PublicationAdd BLAST153
Alternative sequenceiVSP_006469265 – 267Missing in isoform TA-A3. 1 Publication3
Alternative sequenceiVSP_006470295 – 308Missing in isoform TAD. 1 PublicationAdd BLAST14
Alternative sequenceiVSP_006471307 – 308Missing in isoform TA-A2 and isoform TA-A3. 2 Publications2

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF016627 mRNA Translation: AAB95202.1
AF016628 mRNA Translation: AAB95203.1
AF016629 mRNA Translation: AAB95204.1
AF016630 mRNA Translation: AAB95205.1
AF016631 mRNA Translation: AAB95206.1
AF004434 Genomic DNA Translation: AAB88121.1
AF004435 mRNA Translation: AAB88122.1
Y13438 Genomic DNA Translation: CAA73849.1
AJ243657 mRNA Translation: CAB52696.1
AJ243658 mRNA Translation: CAB52697.1
BC144791 mRNA Translation: AAI44792.1
CCDSiCCDS30299.1 [O54693-1]
CCDS53141.1 [O54693-6]
CCDS53143.1 [O54693-3]
RefSeqiNP_001171408.1, NM_001177937.1 [O54693-2]
NP_001171410.1, NM_001177939.1 [O54693-3]
NP_001171413.1, NM_001177942.1 [O54693-6]
NP_034229.1, NM_010099.2 [O54693-1]
UniGeneiMm.328086

Genome annotation databases

EnsembliENSMUST00000113778; ENSMUSP00000109408; ENSMUSG00000059327 [O54693-3]
ENSMUST00000113779; ENSMUSP00000109409; ENSMUSG00000059327 [O54693-1]
ENSMUST00000113780; ENSMUSP00000109410; ENSMUSG00000059327 [O54693-6]
GeneIDi13607
KEGGimmu:13607
UCSCiuc009tvo.1 mouse [O54693-5]
uc009tvp.1 mouse [O54693-4]
uc009tvq.1 mouse [O54693-1]
uc009tvs.1 mouse [O54693-3]
uc009tvu.1 mouse [O54693-2]
uc012hmq.1 mouse [O54693-6]

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF016627 mRNA Translation: AAB95202.1
AF016628 mRNA Translation: AAB95203.1
AF016629 mRNA Translation: AAB95204.1
AF016630 mRNA Translation: AAB95205.1
AF016631 mRNA Translation: AAB95206.1
AF004434 Genomic DNA Translation: AAB88121.1
AF004435 mRNA Translation: AAB88122.1
Y13438 Genomic DNA Translation: CAA73849.1
AJ243657 mRNA Translation: CAB52696.1
AJ243658 mRNA Translation: CAB52697.1
BC144791 mRNA Translation: AAI44792.1
CCDSiCCDS30299.1 [O54693-1]
CCDS53141.1 [O54693-6]
CCDS53143.1 [O54693-3]
RefSeqiNP_001171408.1, NM_001177937.1 [O54693-2]
NP_001171410.1, NM_001177939.1 [O54693-3]
NP_001171413.1, NM_001177942.1 [O54693-6]
NP_034229.1, NM_010099.2 [O54693-1]
UniGeneiMm.328086

3D structure databases

ProteinModelPortaliO54693
SMRiO54693
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi199371, 1 interactor
STRINGi10090.ENSMUSP00000109409

PTM databases

PhosphoSitePlusiO54693

Proteomic databases

PaxDbiO54693
PRIDEiO54693

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000113778; ENSMUSP00000109408; ENSMUSG00000059327 [O54693-3]
ENSMUST00000113779; ENSMUSP00000109409; ENSMUSG00000059327 [O54693-1]
ENSMUST00000113780; ENSMUSP00000109410; ENSMUSG00000059327 [O54693-6]
GeneIDi13607
KEGGimmu:13607
UCSCiuc009tvo.1 mouse [O54693-5]
uc009tvp.1 mouse [O54693-4]
uc009tvq.1 mouse [O54693-1]
uc009tvs.1 mouse [O54693-3]
uc009tvu.1 mouse [O54693-2]
uc012hmq.1 mouse [O54693-6]

Organism-specific databases

CTDi1896
MGIiMGI:1195272 Eda

Phylogenomic databases

eggNOGiENOG410IH6U Eukaryota
ENOG41121ZD LUCA
GeneTreeiENSGT00730000111220
HOGENOMiHOG000231318
HOVERGENiHBG005564
InParanoidiO54693
KOiK05480
OMAiSIHHRVF
OrthoDBiEOG091G0GBQ
PhylomeDBiO54693
TreeFamiTF332099

Enzyme and pathway databases

ReactomeiR-MMU-5669034 TNFs bind their physiological receptors

Miscellaneous databases

ChiTaRSiPrss2 mouse
PROiPR:O54693
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000059327 Expressed in 172 organ(s), highest expression level in remnant of Rathke's pouch
CleanExiMM_EDA
ExpressionAtlasiO54693 baseline and differential
GenevisibleiO54693 MM

Family and domain databases

CDDicd00184 TNF, 1 hit
Gene3Di2.60.120.40, 1 hit
InterProiView protein in InterPro
IPR006052 TNF_dom
IPR008983 Tumour_necrosis_fac-like_dom
PfamiView protein in Pfam
PF00229 TNF, 1 hit
SUPFAMiSSF49842 SSF49842, 1 hit
PROSITEiView protein in PROSITE
PS50049 TNF_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiEDA_MOUSE
AccessioniPrimary (citable) accession number: O54693
Secondary accession number(s): B7ZMT7
, O35705, Q9QWJ8, Q9QZ01, Q9QZ02
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 15, 1999
Last sequence update: July 15, 1999
Last modified: November 7, 2018
This is version 148 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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