Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Pentatricopeptide repeat-containing protein At4g35130, chloroplastic

Gene

PCMP-H27

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At4g35130, chloroplastic
Gene namesi
Name:PCMP-H27
Ordered Locus Names:At4g35130
ORF Names:M4E13.180
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G35130
TAIRilocus:2131631 AT4G35130

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 19ChloroplastSequence analysisAdd BLAST19
ChainiPRO_000036346720 – 804Pentatricopeptide repeat-containing protein At4g35130, chloroplasticAdd BLAST785

Proteomic databases

PaxDbiO49619
PRIDEiO49619

Expressioni

Gene expression databases

ExpressionAtlasiO49619 baseline and differential
GenevisibleiO49619 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G35130.1

Structurei

3D structure databases

ProteinModelPortaliO49619
SMRiO49619
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati63 – 93PPR 1Add BLAST31
Repeati94 – 128PPR 2Add BLAST35
Repeati129 – 163PPR 3Add BLAST35
Repeati164 – 194PPR 4Add BLAST31
Repeati195 – 229PPR 5Add BLAST35
Repeati230 – 264PPR 6Add BLAST35
Repeati266 – 296PPR 7Add BLAST31
Repeati297 – 332PPR 8Add BLAST36
Repeati333 – 363PPR 9Add BLAST31
Repeati364 – 394PPR 10Add BLAST31
Repeati395 – 429PPR 11Add BLAST35
Repeati430 – 464PPR 12Add BLAST35
Repeati465 – 495PPR 13Add BLAST31
Repeati496 – 530PPR 14Add BLAST35
Repeati531 – 561PPR 15Add BLAST31
Repeati567 – 597PPR 16Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni602 – 677Type E motifAdd BLAST76
Regioni678 – 708Type E(+) motifAdd BLAST31
Regioni710 – 804Type DYW motifAdd BLAST95

Sequence similaritiesi

Belongs to the PPR family. PCMP-H subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiO49619
OMAiVKCCARL
OrthoDBiEOG0936067D
PhylomeDBiO49619

Family and domain databases

Gene3Di1.25.40.10, 6 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 6 hits
PF13041 PPR_2, 3 hits
PF13812 PPR_3, 1 hit
SUPFAMiSSF48452 SSF48452, 4 hits
TIGRFAMsiTIGR00756 PPR, 6 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 15 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O49619-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAATLLSQCY RIYNSDACKC VSSENHQTTG KRNGNRNLEF DSGISKPARL
60 70 80 90 100
VLRDRYKVTK QVNDPALTRA LRGFADSRLM EDALQLFDEM NKADAFLWNV
110 120 130 140 150
MIKGFTSCGL YIEAVQFYSR MVFAGVKADT FTYPFVIKSV AGISSLEEGK
160 170 180 190 200
KIHAMVIKLG FVSDVYVCNS LISLYMKLGC AWDAEKVFEE MPERDIVSWN
210 220 230 240 250
SMISGYLALG DGFSSLMLFK EMLKCGFKPD RFSTMSALGA CSHVYSPKMG
260 270 280 290 300
KEIHCHAVRS RIETGDVMVM TSILDMYSKY GEVSYAERIF NGMIQRNIVA
310 320 330 340 350
WNVMIGCYAR NGRVTDAFLC FQKMSEQNGL QPDVITSINL LPASAILEGR
360 370 380 390 400
TIHGYAMRRG FLPHMVLETA LIDMYGECGQ LKSAEVIFDR MAEKNVISWN
410 420 430 440 450
SIIAAYVQNG KNYSALELFQ ELWDSSLVPD STTIASILPA YAESLSLSEG
460 470 480 490 500
REIHAYIVKS RYWSNTIILN SLVHMYAMCG DLEDARKCFN HILLKDVVSW
510 520 530 540 550
NSIIMAYAVH GFGRISVWLF SEMIASRVNP NKSTFASLLA ACSISGMVDE
560 570 580 590 600
GWEYFESMKR EYGIDPGIEH YGCMLDLIGR TGNFSAAKRF LEEMPFVPTA
610 620 630 640 650
RIWGSLLNAS RNHKDITIAE FAAEQIFKME HDNTGCYVLL LNMYAEAGRW
660 670 680 690 700
EDVNRIKLLM ESKGISRTSS RSTVEAKGKS HVFTNGDRSH VATNKIYEVL
710 720 730 740 750
DVVSRMVGEE DIYVHCVSRL RPETLVKSRS NSPRRHSVRL ATCFGLISTE
760 770 780 790 800
TGRRVTVRNN TRICRKCHEF LEKASRLTRR EIVVGDSKIF HHFSNGRCSC

GNYW
Length:804
Mass (Da):90,786
Last modified:June 1, 1998 - v1
Checksum:i22FFFF5D7BC50D54
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL022023 Genomic DNA Translation: CAA17777.1
AL161586 Genomic DNA Translation: CAB80230.1
CP002687 Genomic DNA Translation: AEE86471.1
PIRiT05783
RefSeqiNP_195239.1, NM_119679.2

Genome annotation databases

EnsemblPlantsiAT4G35130.1; AT4G35130.1; AT4G35130
GeneIDi829665
GrameneiAT4G35130.1; AT4G35130.1; AT4G35130
KEGGiath:AT4G35130

Similar proteinsi

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL022023 Genomic DNA Translation: CAA17777.1
AL161586 Genomic DNA Translation: CAB80230.1
CP002687 Genomic DNA Translation: AEE86471.1
PIRiT05783
RefSeqiNP_195239.1, NM_119679.2

3D structure databases

ProteinModelPortaliO49619
SMRiO49619
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT4G35130.1

Proteomic databases

PaxDbiO49619
PRIDEiO49619

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G35130.1; AT4G35130.1; AT4G35130
GeneIDi829665
GrameneiAT4G35130.1; AT4G35130.1; AT4G35130
KEGGiath:AT4G35130

Organism-specific databases

AraportiAT4G35130
TAIRilocus:2131631 AT4G35130

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiO49619
OMAiVKCCARL
OrthoDBiEOG0936067D
PhylomeDBiO49619

Miscellaneous databases

PROiPR:O49619

Gene expression databases

ExpressionAtlasiO49619 baseline and differential
GenevisibleiO49619 AT

Family and domain databases

Gene3Di1.25.40.10, 6 hits
InterProiView protein in InterPro
IPR032867 DYW_dom
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432 DYW_deaminase, 1 hit
PF01535 PPR, 6 hits
PF13041 PPR_2, 3 hits
PF13812 PPR_3, 1 hit
SUPFAMiSSF48452 SSF48452, 4 hits
TIGRFAMsiTIGR00756 PPR, 6 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 15 hits
ProtoNetiSearch...

Entry informationi

Entry nameiPP350_ARATH
AccessioniPrimary (citable) accession number: O49619
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: June 1, 1998
Last modified: April 25, 2018
This is version 110 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again