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Entry version 138 (03 Jul 2019)
Sequence version 1 (01 Jun 1998)
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Protein
Submitted name:

AT4g35110/M4E13_160

Gene

M4E13.160

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
AT4g35110/M4E13_160Imported
Submitted name:
Phospholipase-like protein (PEARLI 4) family proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:M4E13.160Imported
Ordered Locus Names:At4g35110Imported
ORF Names:T12J5.14Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 4

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT4G35110

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
O49617

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

Protein interaction database and analysis system

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IntActi
O49617, 12 interactors

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
O49617

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni34 – 138DisorderedSequence analysisAdd BLAST105
Regioni174 – 194DisorderedSequence analysisAdd BLAST21

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili296 – 316Sequence analysisAdd BLAST21
Coiled coili321 – 369Sequence analysisAdd BLAST49

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi41 – 69PolarSequence analysisAdd BLAST29
Compositional biasi101 – 118PolarSequence analysisAdd BLAST18

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410JWA9 Eukaryota
ENOG411054D LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000015108

Identification of Orthologs from Complete Genome Data

More...
OMAi
CDENCFK

Database of Orthologous Groups

More...
OrthoDBi
890246at2759

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR007942 PLipase-like

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF05278 PEARLI-4, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

O49617-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDFNRKAHPD CVYADNPFHE CASACLEKIA QGHVKKNTKK QSSRLLSFSG
60 70 80 90 100
SFGRKKKESN SQPPTPLSAR PYQNGRGGFA NGNSPKVHHS VAPPASVKKK
110 120 130 140 150
IVSETKNSFT SSSSGDPDDF FNHKPEKKPS QTIPLSSNNL VDQSKVVSPK
160 170 180 190 200
PGIQEHNGKI GEGGETRLFS FLSLPRSPGK ESNDDFSDDD DENNNEIGVE
210 220 230 240 250
LDLESVMSDT FVSVGKYRVR SGSSTILSAV IEKHGDIAQN CKLESDSMRS
260 270 280 290 300
RYLECLCSLM QELRSTPVGQ LSKVKVKEML AVLKDLESVN IEVAWLRSVL
310 320 330 340 350
EEFAQSQEDV ENEKERHDGL VKAKREELEA QETDLVRMEK EVVEVKRRIE
360 370 380
ETRAQMVEIE AERLRMEKMG FKMEKFKGKS FIDELL
Length:386
Mass (Da):43,256
Last modified:June 1, 1998 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i492B1BEA173A042B
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A8MQE1A8MQE1_ARATH
Phospholipase-like protein (PEARLI ...
At4g35110, T12J5.14
401Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
B3H7D4B3H7D4_ARATH
Phospholipase-like protein (PEARLI ...
At4g35110, T12J5.14
398Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF385717 mRNA Translation: AAK60308.1
AY133668 mRNA Translation: AAM91498.1
BT000707 mRNA Translation: AAN31850.1
CP002687 Genomic DNA Translation: AEE86466.1
CP002687 Genomic DNA Translation: AEE86467.1
CP002687 Genomic DNA Translation: ANM67501.1
CP002687 Genomic DNA Translation: ANM67502.1
AL022023 Genomic DNA Translation: CAA17775.1
AL161586 Genomic DNA Translation: CAB80228.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T05781

NCBI Reference Sequences

More...
RefSeqi
NP_001329327.1, NM_001342326.1
NP_001329328.1, NM_001342325.1
NP_195237.1, NM_119677.3
NP_849495.1, NM_179164.2

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT4G35110.1; AT4G35110.1; AT4G35110
AT4G35110.2; AT4G35110.2; AT4G35110
AT4G35110.5; AT4G35110.5; AT4G35110
AT4G35110.6; AT4G35110.6; AT4G35110

Database of genes from NCBI RefSeq genomes

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GeneIDi
829663

Gramene; a comparative resource for plants

More...
Gramenei
AT4G35110.1; AT4G35110.1; AT4G35110
AT4G35110.2; AT4G35110.2; AT4G35110
AT4G35110.5; AT4G35110.5; AT4G35110
AT4G35110.6; AT4G35110.6; AT4G35110

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF385717 mRNA Translation: AAK60308.1
AY133668 mRNA Translation: AAM91498.1
BT000707 mRNA Translation: AAN31850.1
CP002687 Genomic DNA Translation: AEE86466.1
CP002687 Genomic DNA Translation: AEE86467.1
CP002687 Genomic DNA Translation: ANM67501.1
CP002687 Genomic DNA Translation: ANM67502.1
AL022023 Genomic DNA Translation: CAA17775.1
AL161586 Genomic DNA Translation: CAB80228.1
PIRiT05781
RefSeqiNP_001329327.1, NM_001342326.1
NP_001329328.1, NM_001342325.1
NP_195237.1, NM_119677.3
NP_849495.1, NM_179164.2

3D structure databases

SMRiO49617
ModBaseiSearch...

Protein-protein interaction databases

IntActiO49617, 12 interactors

Proteomic databases

PRIDEiO49617

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G35110.1; AT4G35110.1; AT4G35110
AT4G35110.2; AT4G35110.2; AT4G35110
AT4G35110.5; AT4G35110.5; AT4G35110
AT4G35110.6; AT4G35110.6; AT4G35110
GeneIDi829663
GrameneiAT4G35110.1; AT4G35110.1; AT4G35110
AT4G35110.2; AT4G35110.2; AT4G35110
AT4G35110.5; AT4G35110.5; AT4G35110
AT4G35110.6; AT4G35110.6; AT4G35110

Organism-specific databases

AraportiAT4G35110

Phylogenomic databases

eggNOGiENOG410JWA9 Eukaryota
ENOG411054D LUCA
HOGENOMiHOG000015108
OMAiCDENCFK
OrthoDBi890246at2759

Family and domain databases

InterProiView protein in InterPro
IPR007942 PLipase-like
PfamiView protein in Pfam
PF05278 PEARLI-4, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiO49617_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: O49617
Secondary accession number(s): A0A178UYY5
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 1998
Last sequence update: June 1, 1998
Last modified: July 3, 2019
This is version 138 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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