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Protein

60S ribosomal protein L18a

Gene

rpl-20

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-CEL-1799339 SRP-dependent cotranslational protein targeting to membrane
R-CEL-72689 Formation of a pool of free 40S subunits
R-CEL-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-CEL-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-CEL-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L18a
Gene namesi
Name:rpl-20
ORF Names:E04A4.8
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiE04A4.8 ; CE21392 ; WBGene00004432 ; rpl-20

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002139311 – 18060S ribosomal protein L18aAdd BLAST180

Proteomic databases

EPDiO44480
PaxDbiO44480
PeptideAtlasiO44480
PRIDEiO44480

Expressioni

Gene expression databases

BgeeiWBGene00004432

Interactioni

Protein-protein interaction databases

STRINGi6239.E04A4.8.1

Structurei

3D structure databases

ProteinModelPortaliO44480
SMRiO44480
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0829 Eukaryota
COG2157 LUCA
GeneTreeiENSGT00390000015797
HOGENOMiHOG000211377
InParanoidiO44480
KOiK02882
OMAiCRRPAIK
OrthoDBiEOG091G0LX4
PhylomeDBiO44480

Family and domain databases

HAMAPiMF_00273 Ribosomal_L18Ae, 1 hit
InterProiView protein in InterPro
IPR028877 50S_L18Ae/Ribosomal_L18a/L20
IPR023573 Ribosomal_L18a//L18Ae/LX
IPR021138 Ribosomal_L18a/L20_eukaryotes
PANTHERiPTHR10052 PTHR10052, 1 hit
PfamiView protein in Pfam
PF01775 Ribosomal_L18A, 1 hit
PIRSFiPIRSF002190 Ribosomal_L18a, 1 hit

Sequencei

Sequence statusi: Complete.

O44480-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPTKALGETL NEYVVVGRKI PTEKEPVTPI WKMQIFATNH VIAKSRFWYF
60 70 80 90 100
VSMLRRVKKA NGEILSIKQV FEKNPGTVKN YGVWLKYDSR TGHHNMYREY
110 120 130 140 150
RDTTVAGAVT QCYRDMGARH RAQADRIHIL KVQTVKAEDT KRAGIKMFHD
160 170 180
AKIRFPLPHR VTKRKNLSVF TTARQNTHFA
Length:180
Mass (Da):20,959
Last modified:October 1, 2001 - v2
Checksum:i26AD410B87195C3F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081039 Genomic DNA Translation: CCD68709.1
PIRiB88677
T32612
RefSeqiNP_001294214.1, NM_001307285.1

Genome annotation databases

EnsemblMetazoaiE04A4.8; E04A4.8; WBGene00004432
GeneIDi24104384
KEGGicel:CELE_E04A4.8
UCSCiE04A4.8.1 c. elegans

Similar proteinsi

Entry informationi

Entry nameiRL18A_CAEEL
AccessioniPrimary (citable) accession number: O44480
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 6, 2002
Last sequence update: October 1, 2001
Last modified: May 23, 2018
This is version 116 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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