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Protein

EGF-like repeat and discoidin I-like domain-containing protein 3

Gene

EDIL3

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Promotes adhesion of endothelial cells through interaction with the alpha-v/beta-3 integrin receptor. Inhibits formation of vascular-like structures. May be involved in regulation of vascular morphogenesis of remodeling in embryonic development.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi119Calcium1
Metal bindingi120Calcium; via carbonyl oxygen1
Metal bindingi122Calcium1
Metal bindingi136Calcium1
Metal bindingi137Calcium; via carbonyl oxygen1

GO - Molecular functioni

  • calcium ion binding Source: InterPro
  • extracellular matrix structural constituent Source: BHF-UCL
  • integrin binding Source: ProtInc

GO - Biological processi

Keywordsi

Molecular functionDevelopmental protein
Biological processCell adhesion
LigandCalcium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
EGF-like repeat and discoidin I-like domain-containing protein 3
Alternative name(s):
Developmentally-regulated endothelial cell locus 1 protein
Integrin-binding protein DEL1
Gene namesi
Name:EDIL3
Synonyms:DEL1
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 5

Organism-specific databases

EuPathDBiHostDB:ENSG00000164176.12
HGNCiHGNC:3173 EDIL3
MIMi606018 gene
neXtProtiNX_O43854

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Secreted

Pathology & Biotechi

Organism-specific databases

DisGeNETi10085
OpenTargetsiENSG00000164176
PharmGKBiPA27613

Polymorphism and mutation databases

BioMutaiEDIL3

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 23Sequence analysisAdd BLAST23
ChainiPRO_000000752224 – 480EGF-like repeat and discoidin I-like domain-containing protein 3Add BLAST457

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi26 ↔ 371 Publication
Disulfide bondi31 ↔ 481 Publication
Disulfide bondi50 ↔ 591 Publication
Glycosylationi73O-linked (GalNAc...) threonine1 Publication1
Disulfide bondi78 ↔ 891 Publication
Disulfide bondi83 ↔ 1051 Publication
Glycosylationi88O-linked (Fuc...) threonine1 Publication1
Disulfide bondi107 ↔ 1161 Publication
Disulfide bondi123 ↔ 1341 Publication
Disulfide bondi128 ↔ 1431 Publication
Glycosylationi140N-linked (GlcNAc...) asparagine1 Publication1
Disulfide bondi145 ↔ 1541 Publication
Disulfide bondi158 ↔ 314By similarity
Disulfide bondi301 ↔ 305By similarity
Disulfide bondi319 ↔ 476By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

EPDiO43854
MaxQBiO43854
PaxDbiO43854
PeptideAtlasiO43854
PRIDEiO43854
ProteomicsDBi49207
49208 [O43854-2]

PTM databases

iPTMnetiO43854
PhosphoSitePlusiO43854

Expressioni

Gene expression databases

BgeeiENSG00000164176 Expressed in 216 organ(s), highest expression level in Brodmann (1909) area 46
CleanExiHS_EDIL3
GenevisibleiO43854 HS

Organism-specific databases

HPAiHPA020415

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

BioGridi115394, 11 interactors
ELMiO43854
IntActiO43854, 2 interactors
STRINGi9606.ENSP00000296591

Structurei

Secondary structure

1480
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

ProteinModelPortaliO43854
SMRiO43854
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini24 – 60EGF-like 1PROSITE-ProRule annotationAdd BLAST37
Domaini74 – 117EGF-like 2PROSITE-ProRule annotationAdd BLAST44
Domaini119 – 155EGF-like 3PROSITE-ProRule annotationAdd BLAST37
Domaini158 – 314F5/8 type C 1PROSITE-ProRule annotationAdd BLAST157
Domaini319 – 476F5/8 type C 2PROSITE-ProRule annotationAdd BLAST158

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi96 – 98Cell attachment site3

Domaini

EGF2 and EGF3 form a rigid rod via an interdomain calcium ion binding site, while the long linker between EGF1 and EGF2 lends considerable flexibility to EGF1.

Keywords - Domaini

EGF-like domain, Repeat, Signal

Phylogenomic databases

eggNOGiENOG410IFBC Eukaryota
ENOG41114BV LUCA
GeneTreeiENSGT00910000143988
HOGENOMiHOG000236278
HOVERGENiHBG002385
InParanoidiO43854
OMAiCKGDICD
OrthoDBiEOG091G071G
PhylomeDBiO43854
TreeFamiTF330156

Family and domain databases

CDDicd00057 FA58C, 2 hits
Gene3Di2.60.120.260, 2 hits
InterProiView protein in InterPro
IPR029828 EDIL-3
IPR001881 EGF-like_Ca-bd_dom
IPR013032 EGF-like_CS
IPR000742 EGF-like_dom
IPR000152 EGF-type_Asp/Asn_hydroxyl_site
IPR018097 EGF_Ca-bd_CS
IPR000421 FA58C
IPR008979 Galactose-bd-like_sf
PANTHERiPTHR44122:SF3 PTHR44122:SF3, 1 hit
PfamiView protein in Pfam
PF00008 EGF, 2 hits
PF00754 F5_F8_type_C, 2 hits
PF12661 hEGF, 1 hit
SMARTiView protein in SMART
SM00181 EGF, 3 hits
SM00179 EGF_CA, 3 hits
SM00231 FA58C, 2 hits
SUPFAMiSSF49785 SSF49785, 2 hits
PROSITEiView protein in PROSITE
PS00010 ASX_HYDROXYL, 1 hit
PS00022 EGF_1, 2 hits
PS01186 EGF_2, 2 hits
PS50026 EGF_3, 3 hits
PS01187 EGF_CA, 1 hit
PS01285 FA58C_1, 2 hits
PS01286 FA58C_2, 2 hits
PS50022 FA58C_3, 2 hits

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: O43854-1) [UniParc]FASTAAdd to basket
Also known as: Long

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MKRSVAVWLL VGLSLGVPQF GKGDICDPNP CENGGICLPG LADGSFSCEC
60 70 80 90 100
PDGFTDPNCS SVVEVASDEE EPTSAGPCTP NPCHNGGTCE ISEAYRGDTF
110 120 130 140 150
IGYVCKCPRG FNGIHCQHNI NECEVEPCKN GGICTDLVAN YSCECPGEFM
160 170 180 190 200
GRNCQYKCSG PLGIEGGIIS NQQITASSTH RALFGLQKWY PYYARLNKKG
210 220 230 240 250
LINAWTAAEN DRWPWIQINL QRKMRVTGVI TQGAKRIGSP EYIKSYKIAY
260 270 280 290 300
SNDGKTWAMY KVKGTNEDMV FRGNIDNNTP YANSFTPPIK AQYVRLYPQV
310 320 330 340 350
CRRHCTLRME LLGCELSGCS EPLGMKSGHI QDYQITASSI FRTLNMDMFT
360 370 380 390 400
WEPRKARLDK QGKVNAWTSG HNDQSQWLQV DLLVPTKVTG IITQGAKDFG
410 420 430 440 450
HVQFVGSYKL AYSNDGEHWT VYQDEKQRKD KVFQGNFDND THRKNVIDPP
460 470 480
IYARHIRILP WSWYGRITLR SELLGCTEEE
Length:480
Mass (Da):53,765
Last modified:June 1, 1998 - v1
Checksum:iF7171E23A309FD48
GO
Isoform 2 (identifier: O43854-2) [UniParc]FASTAAdd to basket
Also known as: Short, Z20

The sequence of this isoform differs from the canonical sequence as follows:
     66-66: A → G
     67-76: Missing.

Show »
Length:470
Mass (Da):52,748
Checksum:iEFF139A13FE5337A
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti16G → S in AAH30828 (PubMed:15489334).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_05000666A → G in isoform 2. 2 Publications1
Alternative sequenceiVSP_05000767 – 76Missing in isoform 2. 2 Publications10

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U70312 mRNA Translation: AAC02648.1
U70313 mRNA Translation: AAC02649.1
AK312858 mRNA Translation: BAG35710.1
CH471084 Genomic DNA Translation: EAW95917.1
CH471084 Genomic DNA Translation: EAW95918.1
BC030828 mRNA Translation: AAH30828.1
BC053656 mRNA Translation: AAH53656.1
CCDSiCCDS4062.1 [O43854-1]
CCDS64195.1 [O43854-2]
RefSeqiNP_001265571.1, NM_001278642.1 [O43854-2]
NP_005702.3, NM_005711.4 [O43854-1]
UniGeneiHs.482730

Genome annotation databases

EnsembliENST00000296591; ENSP00000296591; ENSG00000164176 [O43854-1]
ENST00000380138; ENSP00000369483; ENSG00000164176 [O43854-2]
GeneIDi10085
KEGGihsa:10085
UCSCiuc003kio.3 human [O43854-1]

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U70312 mRNA Translation: AAC02648.1
U70313 mRNA Translation: AAC02649.1
AK312858 mRNA Translation: BAG35710.1
CH471084 Genomic DNA Translation: EAW95917.1
CH471084 Genomic DNA Translation: EAW95918.1
BC030828 mRNA Translation: AAH30828.1
BC053656 mRNA Translation: AAH53656.1
CCDSiCCDS4062.1 [O43854-1]
CCDS64195.1 [O43854-2]
RefSeqiNP_001265571.1, NM_001278642.1 [O43854-2]
NP_005702.3, NM_005711.4 [O43854-1]
UniGeneiHs.482730

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4D90X-ray2.60A/B24-157[»]
ProteinModelPortaliO43854
SMRiO43854
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi115394, 11 interactors
ELMiO43854
IntActiO43854, 2 interactors
STRINGi9606.ENSP00000296591

PTM databases

iPTMnetiO43854
PhosphoSitePlusiO43854

Polymorphism and mutation databases

BioMutaiEDIL3

Proteomic databases

EPDiO43854
MaxQBiO43854
PaxDbiO43854
PeptideAtlasiO43854
PRIDEiO43854
ProteomicsDBi49207
49208 [O43854-2]

Protocols and materials databases

DNASUi10085
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000296591; ENSP00000296591; ENSG00000164176 [O43854-1]
ENST00000380138; ENSP00000369483; ENSG00000164176 [O43854-2]
GeneIDi10085
KEGGihsa:10085
UCSCiuc003kio.3 human [O43854-1]

Organism-specific databases

CTDi10085
DisGeNETi10085
EuPathDBiHostDB:ENSG00000164176.12
GeneCardsiEDIL3
HGNCiHGNC:3173 EDIL3
HPAiHPA020415
MIMi606018 gene
neXtProtiNX_O43854
OpenTargetsiENSG00000164176
PharmGKBiPA27613
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IFBC Eukaryota
ENOG41114BV LUCA
GeneTreeiENSGT00910000143988
HOGENOMiHOG000236278
HOVERGENiHBG002385
InParanoidiO43854
OMAiCKGDICD
OrthoDBiEOG091G071G
PhylomeDBiO43854
TreeFamiTF330156

Miscellaneous databases

ChiTaRSiEDIL3 human
GenomeRNAii10085
PROiPR:O43854
SOURCEiSearch...

Gene expression databases

BgeeiENSG00000164176 Expressed in 216 organ(s), highest expression level in Brodmann (1909) area 46
CleanExiHS_EDIL3
GenevisibleiO43854 HS

Family and domain databases

CDDicd00057 FA58C, 2 hits
Gene3Di2.60.120.260, 2 hits
InterProiView protein in InterPro
IPR029828 EDIL-3
IPR001881 EGF-like_Ca-bd_dom
IPR013032 EGF-like_CS
IPR000742 EGF-like_dom
IPR000152 EGF-type_Asp/Asn_hydroxyl_site
IPR018097 EGF_Ca-bd_CS
IPR000421 FA58C
IPR008979 Galactose-bd-like_sf
PANTHERiPTHR44122:SF3 PTHR44122:SF3, 1 hit
PfamiView protein in Pfam
PF00008 EGF, 2 hits
PF00754 F5_F8_type_C, 2 hits
PF12661 hEGF, 1 hit
SMARTiView protein in SMART
SM00181 EGF, 3 hits
SM00179 EGF_CA, 3 hits
SM00231 FA58C, 2 hits
SUPFAMiSSF49785 SSF49785, 2 hits
PROSITEiView protein in PROSITE
PS00010 ASX_HYDROXYL, 1 hit
PS00022 EGF_1, 2 hits
PS01186 EGF_2, 2 hits
PS50026 EGF_3, 3 hits
PS01187 EGF_CA, 1 hit
PS01285 FA58C_1, 2 hits
PS01286 FA58C_2, 2 hits
PS50022 FA58C_3, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiEDIL3_HUMAN
AccessioniPrimary (citable) accession number: O43854
Secondary accession number(s): B2R763
, O43855, Q5D094, Q8N610
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 16, 2004
Last sequence update: June 1, 1998
Last modified: November 7, 2018
This is version 153 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. Human chromosome 5
    Human chromosome 5: entries, gene names and cross-references to MIM
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