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Protein

60S ribosomal protein L16-C

Gene

rpl1603

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Miscellaneous

There are three genes for L16 in S.pombe.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-SPO-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-SPO-1799339 SRP-dependent cotranslational protein targeting to membrane
R-SPO-72689 Formation of a pool of free 40S subunits
R-SPO-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-SPO-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-SPO-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L16-C
Gene namesi
Name:rpl1603
Synonyms:rpl16c
ORF Names:SPBC2G2.05
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome II

Organism-specific databases

EuPathDBiFungiDB:SPBC2G2.05
PomBaseiSPBC2G2.05 rpl1603

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001337901 – 19760S ribosomal protein L16-CAdd BLAST197

Proteomic databases

MaxQBiO43004
PaxDbiO43004
PRIDEiO43004

Interactioni

Protein-protein interaction databases

BioGridi276902, 13 interactors
STRINGi4896.SPBC2G2.05.1

Structurei

3D structure databases

ProteinModelPortaliO43004
SMRiO43004
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000225289
InParanoidiO43004
KOiK02872
OMAiCCQGINI
OrthoDBiEOG092C5KDG
PhylomeDBiO43004

Family and domain databases

CDDicd00392 Ribosomal_L13, 1 hit
Gene3Di3.90.1180.10, 1 hit
HAMAPiMF_01366 Ribosomal_L13, 1 hit
InterProiView protein in InterPro
IPR005822 Ribosomal_L13
IPR023563 Ribosomal_L13_CS
IPR005755 Ribosomal_L13_euk/arc
IPR036899 Ribosomal_L13_sf
PANTHERiPTHR11545 PTHR11545, 1 hit
PTHR11545:SF3 PTHR11545:SF3, 1 hit
PfamiView protein in Pfam
PF00572 Ribosomal_L13, 1 hit
PIRSFiPIRSF002181 Ribosomal_L13, 1 hit
SUPFAMiSSF52161 SSF52161, 1 hit
TIGRFAMsiTIGR01077 L13_A_E, 1 hit
PROSITEiView protein in PROSITE
PS00783 RIBOSOMAL_L13, 1 hit

Sequencei

Sequence statusi: Complete.

O43004-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEFQKLVII DAKGHLMGRL ASTVAKQLLA GQKVVVVRCE ELNISGHFFR
60 70 80 90 100
NKLKYLAYLR KACRYNPSRG AFHFRAPSRI FTKAVRGMLP HKTTRGNIAL
110 120 130 140 150
KNLQALEGIP PPFDKQKRLV VPAALRVLRL KPSRKYCTIG RLSSEVGWKY
160 170 180 190
KNIVSKLEER RKIKSAAFYQ AKSANQKHIN VAKTKSSVNE KLAVFGY
Length:197
Mass (Da):22,353
Last modified:June 1, 1998 - v1
Checksum:iC529CC6BB55E77D6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329671 Genomic DNA Translation: CAA17885.1
PIRiT40144
RefSeqiNP_596434.1, NM_001022353.2

Genome annotation databases

EnsemblFungiiSPBC2G2.05.1; SPBC2G2.05.1:pep; SPBC2G2.05
GeneIDi2540373
KEGGispo:SPBC2G2.05

Similar proteinsi

Entry informationi

Entry nameiRL16C_SCHPO
AccessioniPrimary (citable) accession number: O43004
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: June 1, 1998
Last modified: February 28, 2018
This is version 123 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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