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Protein

Capsid protein

Gene

CP

Organism
Tomato mosaic virus (strain S-1) (ToMV)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
Coat protein
Gene namesi
Name:CP
OrganismiTomato mosaic virus (strain S-1) (ToMV)
Taxonomic identifieri138314 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageVirgaviridaeTobamovirus
Virus hostiAntirrhinum majus (Garden snapdragon) [TaxID: 4151]
Capsicum (peppers) [TaxID: 4071]
Delphinium [TaxID: 46246]
Petunia [TaxID: 4101]
Solanum lycopersicum (Tomato) (Lycopersicon esculentum) [TaxID: 4081]
Tagetes (marigolds) [TaxID: 13707]
Proteomesi
  • UP000008254 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved; by hostBy similarity
ChainiPRO_00001449512 – 159Capsid proteinAdd BLAST158

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylserine; by hostBy similarity1

Keywords - PTMi

Acetylation

Structurei

3D structure databases

ProteinModelPortaliO41345
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the virgaviridae capsid protein family.Curated

Phylogenomic databases

OrthoDBiVOG0900011A

Family and domain databases

Gene3Di1.20.120.70, 1 hit
InterProiView protein in InterPro
IPR001337 TMV-like_coat
IPR036417 TMV-like_coat_sf
PfamiView protein in Pfam
PF00721 TMV_coat, 1 hit
SUPFAMiSSF47195 SSF47195, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

O41345-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSYSITSPSQ FVFLSSVWAD PIELLNVCTN SLGNQFQTQQ ARTTVQQQFS
60 70 80 90 100
EVWKPFPQST VRFPGDVYKV YRYNAVLDPL ITALLGSFDT RNRIIEVENQ
110 120 130 140 150
QSPTTAETLD ATRRVDDATV AIRSAINNLV NELVRGTGLY NQNTFESMSG

LVWTSAPAS
Length:159
Mass (Da):17,762
Last modified:January 23, 2007 - v3
Checksum:i8AA3F1A557E56D18
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ132845 Genomic RNA Translation: CAB37000.1
AJ011934 Genomic RNA Translation: CAA09879.1
Z98201 Genomic RNA Translation: CAB10892.1

Similar proteinsi

Entry informationi

Entry nameiCAPSD_TOMS1
AccessioniPrimary (citable) accession number: O41345
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: January 23, 2007
Last modified: October 25, 2017
This is version 58 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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