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Protein
Submitted name:

Transcription factor USF-1

Gene

Usf1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-RNO-9018519 Estrogen-dependent gene expression

Names & Taxonomyi

Protein namesi
Submitted name:
Transcription factor USF-1Imported
Submitted name:
Upstream transcription factor 1Imported
Submitted name:
Upstream transcription factor 1, isoform CRA_aImported
Gene namesi
Name:Usf1Imported
ORF Names:rCG_20095Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 13

Organism-specific databases

RGDi620974 Usf1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSRNOG00000004255 Expressed in 10 organ(s), highest expression level in spleen

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000005811

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini199 – 254BHLHInterPro annotationAdd BLAST56

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili251 – 295Sequence analysisAdd BLAST45

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG410INSE Eukaryota
ENOG4110B3H LUCA
GeneTreeiENSGT00390000004498
HOGENOMiHOG000294174
HOVERGENiHBG004346
KOiK09106
OMAiNQRTIAP
OrthoDBiEOG091G0RH5
TreeFamiTF323338

Family and domain databases

CDDicd00083 HLH, 1 hit
Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR011598 bHLH_dom
IPR024097 bHLH_ZIP_TF
IPR036638 HLH_DNA-bd_sf
PANTHERiPTHR12565 PTHR12565, 1 hit
PfamiView protein in Pfam
PF00010 HLH, 1 hit
SMARTiView protein in SMART
SM00353 HLH, 1 hit
SUPFAMiSSF47459 SSF47459, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit

Sequencei

Sequence statusi: Complete.

O35410-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKGQQKTAET EEGTVQIQEG AVATGEDPTS VAIASIQSAA TFPDPNVKYV
60 70 80 90 100
FRTENGGQVM YRVIQVSEGQ LDGQTEGSGA ISGYPATQSM TQAVIQGAFT
110 120 130 140 150
SDDAVDAEGT AAETHYTYFP STAVGDGSGG TTSGSTTAVV TTQGSEALLG
160 170 180 190 200
QATPPSTGQF FVMMSPQEVL QGGSQRSIAP RTHPYSPKSE APRTTRDEKR
210 220 230 240 250
RAQHNEVERR RRDKINNWIV QLSKIIPDCS MESTKSGQSK GGILSKACDY
260 270 280 290 300
IQELRQSNHR LSEELQGLDQ LQLDNDVLRQ QVEDLKNKNL LLRAQLRHHG
310
LEVVIKNDSN
Length:310
Mass (Da):33,570
Last modified:January 1, 1998 - v1
Checksum:i995EE919B8E750B6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC125857 Genomic DNA No translation available.
AF026476 mRNA Translation: AAB82712.1
BC088849 mRNA Translation: AAH88849.1
CH473985 Genomic DNA Translation: EDL94648.1
CH473985 Genomic DNA Translation: EDL94650.1
RefSeqiNP_113965.1, NM_031777.2
XP_006250328.1, XM_006250266.2
UniGeneiRn.10845

Genome annotation databases

EnsembliENSRNOT00000005811; ENSRNOP00000005811; ENSRNOG00000004255
GeneIDi83586
KEGGirno:83586
UCSCiRGD:620974 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC125857 Genomic DNA No translation available.
AF026476 mRNA Translation: AAB82712.1
BC088849 mRNA Translation: AAH88849.1
CH473985 Genomic DNA Translation: EDL94648.1
CH473985 Genomic DNA Translation: EDL94650.1
RefSeqiNP_113965.1, NM_031777.2
XP_006250328.1, XM_006250266.2
UniGeneiRn.10845

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000005811

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000005811; ENSRNOP00000005811; ENSRNOG00000004255
GeneIDi83586
KEGGirno:83586
UCSCiRGD:620974 rat

Organism-specific databases

CTDi7391
RGDi620974 Usf1

Phylogenomic databases

eggNOGiENOG410INSE Eukaryota
ENOG4110B3H LUCA
GeneTreeiENSGT00390000004498
HOGENOMiHOG000294174
HOVERGENiHBG004346
KOiK09106
OMAiNQRTIAP
OrthoDBiEOG091G0RH5
TreeFamiTF323338

Enzyme and pathway databases

ReactomeiR-RNO-9018519 Estrogen-dependent gene expression

Gene expression databases

BgeeiENSRNOG00000004255 Expressed in 10 organ(s), highest expression level in spleen

Family and domain databases

CDDicd00083 HLH, 1 hit
Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR011598 bHLH_dom
IPR024097 bHLH_ZIP_TF
IPR036638 HLH_DNA-bd_sf
PANTHERiPTHR12565 PTHR12565, 1 hit
PfamiView protein in Pfam
PF00010 HLH, 1 hit
SMARTiView protein in SMART
SM00353 HLH, 1 hit
SUPFAMiSSF47459 SSF47459, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiO35410_RAT
AccessioniPrimary (citable) accession number: O35410
Entry historyiIntegrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: November 7, 2018
This is version 137 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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