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Protein
Submitted name:

Putative pheromone receptor

Gene

Vom2r27

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionG-protein coupled receptorSAAS annotation, Receptor, Transducer

Names & Taxonomyi

Protein namesi
Submitted name:
Putative pheromone receptorImported
Submitted name:
Vomeronasal 2 receptor, 27Imported
Gene namesi
Name:Vom2r27Imported
Synonyms:Go-VN5Imported, LOC286914Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 1

Organism-specific databases

RGDi708442 Vom2r27

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei513 – 530HelicalSequence analysisAdd BLAST18
Transmembranei542 – 565HelicalSequence analysisAdd BLAST24
Transmembranei577 – 601HelicalSequence analysisAdd BLAST25
Transmembranei621 – 638HelicalSequence analysisAdd BLAST18
Transmembranei672 – 689HelicalSequence analysisAdd BLAST18
Transmembranei701 – 721HelicalSequence analysisAdd BLAST21
Transmembranei733 – 756HelicalSequence analysisAdd BLAST24

Keywords - Cellular componenti

Cell membraneSAAS annotation, Membrane

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000030140

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini507 – 771G_PROTEIN_RECEP_F3_4InterPro annotationAdd BLAST265

Sequence similaritiesi

Belongs to the G-protein coupled receptor 3 family.SAAS annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiKOG1056 Eukaryota
ENOG410XR6W LUCA
GeneTreeiENSGT00760000118974
HOGENOMiHOG000232091
HOVERGENiHBG098472
OMAiSWTISEC
OrthoDBiEOG091G02M6
TreeFamiTF340115
TF353350

Family and domain databases

Gene3Di2.10.50.30, 1 hit
InterProiView protein in InterPro
IPR001828 ANF_lig-bd_rcpt
IPR000337 GPCR_3
IPR011500 GPCR_3_9-Cys_dom
IPR038550 GPCR_3_9-Cys_sf
IPR017978 GPCR_3_C
IPR004073 GPCR_3_vmron_rcpt_2
IPR028082 Peripla_BP_I
PfamiView protein in Pfam
PF00003 7tm_3, 1 hit
PF01094 ANF_receptor, 1 hit
PF07562 NCD3G, 1 hit
PRINTSiPR00248 GPCRMGR
PR01535 VOMERONASL2R
SUPFAMiSSF53822 SSF53822, 1 hit
PROSITEiView protein in PROSITE
PS50259 G_PROTEIN_RECEP_F3_4, 1 hit

Sequencei

Sequence statusi: Complete.

O35269-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRFAIEEINS NPHLLPNTSL GFEINNVPHG QRYTLVKLFS SLSGSNYDIP
60 70 80 90 100
NYISASESNS AAVLTGPSWT ISECVGTLLD LYKFPQLTFG PFDSLLSEQR
110 120 130 140 150
RFSSLYQVAP KDTFLTPGIV SLMLHFHWNW VGLFIIDDDK GAQTLSDLRN
160 170 180 190 200
EMDKNGVCTA FVEMIPVIKG SFFTKSWKNH VQILESSSNV IIIYGDSDSL
210 220 230 240 250
LSLIVNIKQK LLTWKVWVLI SQWDVSKFDD YFMVDSLHGA LIFSHHREEI
260 270 280 290 300
PNFTDFMQKY NPSKYPEDTY LHVLWHMYFN CSFVKKDCKI VHNCLPNASL
310 320 330 340 350
GFLPGNIFDM AMSEESYNVY NAVYAVAHSL HEMILNQVQF QTHEKGKKMV
360 370 380 390 400
FFPWQLHPFL RERQLINQNG ANEDLDCTRK SHVEYDILNF WNFPKGLGLN
410 420 430 440 450
VKVGTFSPSA PKEQKLSISS NMIQWATGST EIPQSVCSES CHPGFRKTHQ
460 470 480 490 500
EGRVACCFDC IPCPENEISN ETDVDQCVKC PETHYANIEK IHCLQKTVTF
510 520 530 540 550
LYYDDPLGKT LCFMSLGFSS LTAAVLVVFL KNRDTPIVKA NNLALSYTLL
560 570 580 590 600
ITLMLCFLCP LLFIGRPSTA SCILQQNIFG LLFTVALSTV LAKTITVVIA
610 620 630 640 650
FKITSPGRIR RWLLISRAPN FIIPLCTLLQ VFLSGIWLTT SPPFIDKDAH
660 670 680 690 700
SEHGHIIIIC NKGSAVAFHC NLGYLGALAL VSYFMAFLSR NLPDTFNEAK
710 720 730 740 750
FLAFSMLVFC SVWVTFLPVY HSTKGKNMVA MEVFSILASS TSLLGIIFAP
760 770
KCYLILLRPE RNSLSYIRDK TYAKSIKPS
Length:779
Mass (Da):88,097
Last modified:January 1, 1998 - v1
Checksum:i67718B68019DA0E2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07002005 Genomic DNA No translation available.
AABR07002006 Genomic DNA No translation available.
AF016182 mRNA Translation: AAC53329.1
RefSeqiNP_775153.1, NM_173130.1
UniGeneiRn.10810

Genome annotation databases

EnsembliENSRNOT00000036807; ENSRNOP00000033278; ENSRNOG00000048635
GeneIDi286914
KEGGirno:286914
UCSCiRGD:708442 rat

Similar proteinsi

Entry informationi

Entry nameiO35269_RAT
AccessioniPrimary (citable) accession number: O35269
Secondary accession number(s): F1M7D4
Entry historyiIntegrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: March 28, 2018
This is version 126 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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