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Entry version 91 (12 Aug 2020)
Sequence version 1 (01 Jan 1998)
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Protein

Uncharacterized membrane protein YobI

Gene

yobI

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
BSUB:BSU18970-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Uncharacterized membrane protein YobI
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:yobI
Ordered Locus Names:BSU18970
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBacillus subtilis (strain 168)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri224308 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001570 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei140 – 160HelicalSequence analysisAdd BLAST21

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Cell membrane, Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003759091 – 1201Uncharacterized membrane protein YobIAdd BLAST1201

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

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PaxDbi
O34784

PRoteomics IDEntifications database

More...
PRIDEi
O34784

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
224308.BSU18970

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili420 – 459Sequence analysisAdd BLAST40
Coiled coili536 – 574Sequence analysisAdd BLAST39

Keywords - Domaini

Coiled coil, Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
COG5290, Bacteria

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
O34784

Identification of Orthologs from Complete Genome Data

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OMAi
EILYFFQ

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR011646, KAP_P-loop
IPR027417, P-loop_NTPase

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF07693, KAP_NTPase, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540, SSF52540, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

O34784-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGEIKKKFVQ WLEKLLIRLK EPNVKEESLF EDLSPSNDVD TDGKYSKALS
60 70 80 90 100
WGLENKKVKN IALTGPYGSG KSSILNTFQK QYSREYSFLN ISLATFNTDT
110 120 130 140 150
DDMENKLEKS ILQQMIYRVH DRTIPFSRFK RIKHIRTKSI IINLIFFFAF
160 170 180 190 200
IIVGIYLFKP DALKGIYAET LVSRSLGTED QQQIRLTILL ALFFIVYPLL
210 220 230 240 250
AYKRIYHFVR ANLKLNKVTI ANTTLEKNTG EENSSIFDKY LDEILYFFEA
260 270 280 290 300
SKYNVVIFED LDRFNNIGIF ERLRELNELI NNSEQIDRRV VFIYAIKDDI
310 320 330 340 350
FGDADTEKLT RDRTKFFDFI IPVIPIINAS NSGDILKKKI KHSPYSDLIN
360 370 380 390 400
THFLEDVTIY IDDMRVLKNI FNEFVIYQQK LSAIDLDPNK MLAMIIYKNI
410 420 430 440 450
YPVDFSKLQY NKGLVYEIFQ KKQLIIEEQI KLINAKIQQL ERKLANIEVE
460 470 480 490 500
SLKSIAELNF IYLSELEISN LNSNYDINID GEVFRGNTSN KDRFFEKLKN
510 520 530 540 550
ADTIYCYLRN RNGPATIKEI ATVFGRKPNY FEREDAIKAI EKNEIQKFKK
560 570 580 590 600
ELLELEREKQ EIRAQSLQVL ITKMNSKDVF SDKLYEKKLL VYLLRHGYID
610 620 630 640 650
EMYNHYITYF YPESLSLSDI KFVFSIKNHE SLPYSFELDN IGKIMSKLVG
660 670 680 690 700
AEFKQIEVLN FHLLNYIMDH SEYRNYYDSI IERLANGSKE SVTFIDGFKE
710 720 730 740 750
RAINKAAFIQ SISSKWDDFW SFIELRSNYT QQKKEEYLSD ILTYADIADI
760 770 780 790 800
IRMNKESVMS FTLSKYLNLL SLVSDEEKIK ELLLKLQVKF KSLDHLLNSE
810 820 830 840 850
TIYDFVVQRN LYEINIKTLS VILNDAPNIT YAAVKNSDQQ AVINYVNDNI
860 870 880 890 900
DIFVEKVLLT EEIEEPEESF LELLNREDLD KRVKHAMIMK KTFAISDIGE
910 920 930 940 950
LIKELWPIVI RENKMVACWS NVITSYVEYN KKMPDFLIAF LNNPVNRKEL
960 970 980 990 1000
SKNNIEAFDD KFDEAILEDI SEEIINSRDI TDETFEVLIA SIQSWIYFPL
1010 1020 1030 1040 1050
GNVSEKRAKL LIDNDLLSLT PENFKELKLN FDTLHIQLAL RNPDEFIDKQ
1060 1070 1080 1090 1100
GDFSLDANDI KQLIDSNELS QFNKEIFVQH LNSNCLTDGN NDILKDTIYF
1110 1120 1130 1140 1150
INEHNLKITN ELLTFLLESP TTLDTRLSLL AGQIKHIDNE SITEFLTKIG
1160 1170 1180 1190 1200
EPYSEIAEKG RRIKISNNRT NKALVTALES KNYISSFKED RERLRVNTKK

K
Length:1,201
Mass (Da):140,620
Last modified:January 1, 1998 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i75F1E03D97AED2A2
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF027868 Genomic DNA Translation: AAB84461.1
AL009126 Genomic DNA Translation: CAB13789.1

Protein sequence database of the Protein Information Resource

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PIRi
H69898

NCBI Reference Sequences

More...
RefSeqi
NP_389778.1, NC_000964.3
WP_004399367.1, NZ_JNCM01000036.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
CAB13789; CAB13789; BSU18970

Database of genes from NCBI RefSeq genomes

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GeneIDi
939615

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
bsu:BSU18970

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|224308.179.peg.2074

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF027868 Genomic DNA Translation: AAB84461.1
AL009126 Genomic DNA Translation: CAB13789.1
PIRiH69898
RefSeqiNP_389778.1, NC_000964.3
WP_004399367.1, NZ_JNCM01000036.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi224308.BSU18970

Proteomic databases

PaxDbiO34784
PRIDEiO34784

Genome annotation databases

EnsemblBacteriaiCAB13789; CAB13789; BSU18970
GeneIDi939615
KEGGibsu:BSU18970
PATRICifig|224308.179.peg.2074

Phylogenomic databases

eggNOGiCOG5290, Bacteria
InParanoidiO34784
OMAiEILYFFQ

Enzyme and pathway databases

BioCyciBSUB:BSU18970-MONOMER

Family and domain databases

InterProiView protein in InterPro
IPR011646, KAP_P-loop
IPR027417, P-loop_NTPase
PfamiView protein in Pfam
PF07693, KAP_NTPase, 1 hit
SUPFAMiSSF52540, SSF52540, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiYOBI_BACSU
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: O34784
Secondary accession number(s): Q796E3
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 26, 2009
Last sequence update: January 1, 1998
Last modified: August 12, 2020
This is version 91 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome
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