Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Entry version 145 (02 Jun 2021)
Sequence version 1 (01 Jan 1998)
Previous versions | rss
Add a publicationFeedback
Protein

Cold shock protein CspA

Gene

cspB

Organism
Staphylococcus aureus
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Cold shock protein CspAARBA annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:cspBImported
Synonyms:cspCImported, cspLAImported
ORF Names:A2U18_14195Imported, A7Q05_0011Imported, A7U51_2950Imported, BN1321_430081Imported, BSG38_15200Imported, C7P97_05620Imported, CSC83_09125Imported, CSC87_00850Imported, CV021_10695Imported, DD547_02736Imported, DQV53_15575Imported, E3A28_08695Imported, E3K14_14435Imported, E4U00_08600Imported, E5491_15270Imported, EP54_05490Imported, EQ90_05880Imported, ER624_12625Imported, FA040_05855Imported, FPP48_14710Imported, FVP29_17755Imported, G6X35_06690Imported, G6Y10_07410Imported, G6Y24_09840Imported, G6Y28_06725Imported, G6Y30_17480Imported, GF559_09880Imported, GO788_07245Imported, GO814_09840Imported, GQX47_06490Imported, GZ128_02765Imported, GZ145_01255Imported, H2623_02785Imported, H4Q63_06315Imported, HMPREF2819_08620Imported, HMPREF3211_01006Imported, HT539_10085Imported, HU771_06620Imported, HW113_14840Imported, HYH24_13635Imported, LG33_15155Imported, QU38_15580Imported, RK65_003845Imported, SABB_06319Imported, SAHC1340_00600Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates if the gene coding for the protein originates from the hydrogenosome, the mitochondrion, the nucleomorph, different plastids or a plasmid. The absence of this section means that the gene is located in one of the main chromosomal element(s).<p><a href='/help/encoded_on' target='_top'>More...</a></p>Encoded oniPlasmid unnamed1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiStaphylococcus aureusImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1280 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesStaphylococcaceaeStaphylococcus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

CytoplasmARBA annotation

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1 – 65CSDInterPro annotationAdd BLAST65

Phylogenomic databases

Database of Orthologous Groups

More...
OrthoDBi
2034748at2

Family and domain databases

Conserved Domains Database

More...
CDDi
cd04458, CSP_CDS, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR012156, Cold_shock_CspA
IPR011129, CSD
IPR019844, CSD_1
IPR002059, CSP_DNA-bd
IPR012340, NA-bd_OB-fold

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00313, CSD, 1 hit

PIRSF; a whole-protein classification database

More...
PIRSFi
PIRSF002599, Cold_shock_A, 1 hit

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00050, COLDSHOCK

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00357, CSP, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF50249, SSF50249, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00352, CSD_1, 1 hit
PS51857, CSD_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

O33591-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNNGTVKWFN AEKGFGFIEQ ENGGDVFVHF SGIASDGYKT LEEGQKVTFE
60
ITEGQRGDQA VNVQTV
Length:66
Mass (Da):7,258
Last modified:January 1, 1998 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i8AB2BF8C252C1AC7
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF003592 Genomic DNA Translation: AAB61743.1
CP012011 Genomic DNA Translation: ALY16682.1
CP016863 Genomic DNA Translation: AOH68855.1
CP016855 Genomic DNA Translation: AOH71101.1
CP009423 Genomic DNA Translation: APW52340.1
CP018766 Genomic DNA Translation: APZ38715.1
CP017091 Genomic DNA Translation: ASC54947.1
CP026077 Genomic DNA Translation: AUU75141.1
CP005288 Genomic DNA Translation: AWH56830.1
CP031670 Genomic DNA Translation: AXP72546.1
CVOQ01000038 Genomic DNA Translation: CRI20097.1
JXIG01000630 Genomic DNA Translation: KIT95325.1
LALJ01000007 Genomic DNA Translation: KMR37017.1
LALQ01000017 Genomic DNA Translation: KMR57600.1
LRQH01000088 Genomic DNA Translation: KXA37233.1
JACGNN010000001 Genomic DNA Translation: MBA6010542.1
JACGYH010000003 Genomic DNA Translation: MBA8649581.1
JABXAU010000005 Genomic DNA Translation: MBB2558123.1
WKGB01000015 Genomic DNA Translation: MRV28961.1
WPRM01000075 Genomic DNA Translation: MVI78319.1
WPTS01000027 Genomic DNA Translation: MVK35437.1
JAAFLQ010000004 Genomic DNA Translation: NDP78770.1
JAAFNF010000003 Genomic DNA Translation: NDR36710.1
JAALSI010000008 Genomic DNA Translation: NGR83923.1
JAALTD010000781 Genomic DNA Translation: NGT22062.1
JAALTV010000296 Genomic DNA Translation: NGV91088.1
JAALTK010000050 Genomic DNA Translation: NGW61534.1
JAALTR010000230 Genomic DNA Translation: NGW67795.1
JAANDS010000011 Genomic DNA Translation: NUW99453.1
JABWTH010000006 Genomic DNA Translation: NVE19370.1
JACBAO010000015 Genomic DNA Translation: NZD73141.1
LTFK01000004 Genomic DNA Translation: OFK42221.1
PGWZ01000406 Genomic DNA Translation: PPJ73312.1
PDUY01000108 Genomic DNA Translation: PPJ93699.1
PDVL01000003 Genomic DNA Translation: PPK16574.1
PZSP01000011 Genomic DNA Translation: PZJ47395.1
CP039156 Genomic DNA Translation: QBZ87016.1
CP030410 Genomic DNA Translation: QFJ24296.1
CP058312 Genomic DNA Translation: QLD20674.1
CP049394 Genomic DNA Translation: QNW11803.1
SDOB01000013 Genomic DNA Translation: RXS02265.1
SOPO01000001 Genomic DNA Translation: TFE17173.1
SOPD01000001 Genomic DNA Translation: TFE22430.1
SPPY01000002 Genomic DNA Translation: TFU35788.1
SWED01000005 Genomic DNA Translation: TKC12022.1
VRSB01001612 Genomic DNA Translation: TXO03366.1

Protein sequence database of the Protein Information Resource

More...
PIRi
G90079

NCBI Reference Sequences

More...
RefSeqi
WP_001059079.1, NZ_WYDB01000001.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AUS76695; AUS76695; BTN44_16305
AVG62767; AVG62767; RK64_00630
CRI20097; CRI20097; BN1321_430081
GBV20466; GBV20466; M1K003_1457
KIT95325; KIT95325; QU38_15580
KXA37233; KXA37233; HMPREF3211_01006
OFK42221; OFK42221; HMPREF2819_08620
PPJ73312; PPJ73312; CV021_10695
PPJ93699; PPJ93699; CSC83_09125
PPK16574; PPK16574; CSC87_00850
QBZ87016; QBZ87016; E5491_15270
TJX36733; TJX36733; FAF19_06770
TJX38732; TJX38732; FAF18_11680
TJX47574; TJX47574; FAF15_04325
TJX51645; TJX51645; FAF22_00285
TJX54213; TJX54213; FAF13_06715
TJX59021; TJX59021; FAF16_00365
TJX61624; TJX61624; FAF14_05785
TJX75378; TJX75378; FAF10_14270
TJX80293; TJX80293; FAF38_04090
TJX98032; TJX98032; FAF37_05985
TJY06299; TJY06299; FAF17_09085

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
58068546

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
sams:NI36_13635
saud:CH52_05495
sauf:X998_2691

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|1280.10341.peg.2773
fig|46170.102.peg.2688

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF003592 Genomic DNA Translation: AAB61743.1
CP012011 Genomic DNA Translation: ALY16682.1
CP016863 Genomic DNA Translation: AOH68855.1
CP016855 Genomic DNA Translation: AOH71101.1
CP009423 Genomic DNA Translation: APW52340.1
CP018766 Genomic DNA Translation: APZ38715.1
CP017091 Genomic DNA Translation: ASC54947.1
CP026077 Genomic DNA Translation: AUU75141.1
CP005288 Genomic DNA Translation: AWH56830.1
CP031670 Genomic DNA Translation: AXP72546.1
CVOQ01000038 Genomic DNA Translation: CRI20097.1
JXIG01000630 Genomic DNA Translation: KIT95325.1
LALJ01000007 Genomic DNA Translation: KMR37017.1
LALQ01000017 Genomic DNA Translation: KMR57600.1
LRQH01000088 Genomic DNA Translation: KXA37233.1
JACGNN010000001 Genomic DNA Translation: MBA6010542.1
JACGYH010000003 Genomic DNA Translation: MBA8649581.1
JABXAU010000005 Genomic DNA Translation: MBB2558123.1
WKGB01000015 Genomic DNA Translation: MRV28961.1
WPRM01000075 Genomic DNA Translation: MVI78319.1
WPTS01000027 Genomic DNA Translation: MVK35437.1
JAAFLQ010000004 Genomic DNA Translation: NDP78770.1
JAAFNF010000003 Genomic DNA Translation: NDR36710.1
JAALSI010000008 Genomic DNA Translation: NGR83923.1
JAALTD010000781 Genomic DNA Translation: NGT22062.1
JAALTV010000296 Genomic DNA Translation: NGV91088.1
JAALTK010000050 Genomic DNA Translation: NGW61534.1
JAALTR010000230 Genomic DNA Translation: NGW67795.1
JAANDS010000011 Genomic DNA Translation: NUW99453.1
JABWTH010000006 Genomic DNA Translation: NVE19370.1
JACBAO010000015 Genomic DNA Translation: NZD73141.1
LTFK01000004 Genomic DNA Translation: OFK42221.1
PGWZ01000406 Genomic DNA Translation: PPJ73312.1
PDUY01000108 Genomic DNA Translation: PPJ93699.1
PDVL01000003 Genomic DNA Translation: PPK16574.1
PZSP01000011 Genomic DNA Translation: PZJ47395.1
CP039156 Genomic DNA Translation: QBZ87016.1
CP030410 Genomic DNA Translation: QFJ24296.1
CP058312 Genomic DNA Translation: QLD20674.1
CP049394 Genomic DNA Translation: QNW11803.1
SDOB01000013 Genomic DNA Translation: RXS02265.1
SOPO01000001 Genomic DNA Translation: TFE17173.1
SOPD01000001 Genomic DNA Translation: TFE22430.1
SPPY01000002 Genomic DNA Translation: TFU35788.1
SWED01000005 Genomic DNA Translation: TKC12022.1
VRSB01001612 Genomic DNA Translation: TXO03366.1
PIRiG90079
RefSeqiWP_001059079.1, NZ_WYDB01000001.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiAUS76695; AUS76695; BTN44_16305
AVG62767; AVG62767; RK64_00630
CRI20097; CRI20097; BN1321_430081
GBV20466; GBV20466; M1K003_1457
KIT95325; KIT95325; QU38_15580
KXA37233; KXA37233; HMPREF3211_01006
OFK42221; OFK42221; HMPREF2819_08620
PPJ73312; PPJ73312; CV021_10695
PPJ93699; PPJ93699; CSC83_09125
PPK16574; PPK16574; CSC87_00850
QBZ87016; QBZ87016; E5491_15270
TJX36733; TJX36733; FAF19_06770
TJX38732; TJX38732; FAF18_11680
TJX47574; TJX47574; FAF15_04325
TJX51645; TJX51645; FAF22_00285
TJX54213; TJX54213; FAF13_06715
TJX59021; TJX59021; FAF16_00365
TJX61624; TJX61624; FAF14_05785
TJX75378; TJX75378; FAF10_14270
TJX80293; TJX80293; FAF38_04090
TJX98032; TJX98032; FAF37_05985
TJY06299; TJY06299; FAF17_09085
GeneIDi58068546
KEGGisams:NI36_13635
saud:CH52_05495
sauf:X998_2691
PATRICifig|1280.10341.peg.2773
fig|46170.102.peg.2688

Phylogenomic databases

OrthoDBi2034748at2

Family and domain databases

CDDicd04458, CSP_CDS, 1 hit
InterProiView protein in InterPro
IPR012156, Cold_shock_CspA
IPR011129, CSD
IPR019844, CSD_1
IPR002059, CSP_DNA-bd
IPR012340, NA-bd_OB-fold
PfamiView protein in Pfam
PF00313, CSD, 1 hit
PIRSFiPIRSF002599, Cold_shock_A, 1 hit
PRINTSiPR00050, COLDSHOCK
SMARTiView protein in SMART
SM00357, CSP, 1 hit
SUPFAMiSSF50249, SSF50249, 1 hit
PROSITEiView protein in PROSITE
PS00352, CSD_1, 1 hit
PS51857, CSD_2, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiO33591_STAAU
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: O33591
Secondary accession number(s): A0A0D1GGA2, A0A1E8XFC2
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: June 2, 2021
This is version 145 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

PlasmidImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again