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Protein
Submitted name:

Xylanase

Gene

XynF

Organism
Caldicellulosiruptor saccharolyticus (Caldocellum saccharolyticum)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionGlycosidaseImported, Hydrolase
Biological processCarbohydrate metabolism, Polysaccharide degradation, Xylan degradationImported

Protein family/group databases

Carbohydrate-Active enZymes

More...
CAZyi
CBM22 Carbohydrate-Binding Module Family 22
CBM6 Carbohydrate-Binding Module Family 6
GH43 Glycoside Hydrolase Family 43

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
XylanaseImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:XynFImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCaldicellulosiruptor saccharolyticus (Caldocellum saccharolyticum)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri44001 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacterales Family III. Incertae SedisCaldicellulosiruptor

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei12 – 32HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
O30426

Database of comparative protein structure models

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ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1219 – 1346CBM6InterPro annotationAdd BLAST128

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG4105DT9 Bacteria
COG3507 LUCA

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.115.10.20, 2 hits
2.60.120.260, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR006584 Cellulose-bd_IV
IPR003305 CenC_carb-bd
IPR005084 CMB_fam6
IPR013320 ConA-like_dom_sf
IPR008979 Galactose-bd-like_sf
IPR006710 Glyco_hydro_43
IPR023296 Glyco_hydro_beta-prop_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02018 CBM_4_9, 1 hit
PF03422 CBM_6, 1 hit
PF04616 Glyco_hydro_43, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00606 CBD_IV, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF49785 SSF49785, 2 hits
SSF49899 SSF49899, 1 hit
SSF75005 SSF75005, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51175 CBM6, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

O30426-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MANKLLRWIK KIVLPAILVI CLILSAFVNF QINKAYSSSN QQGGSKLLQN
60 70 80 90 100
NTISSNPIIL SDIPDPDIIR VGNDYYMVST TMHLTPGVPI MHSTDLVNWR
110 120 130 140 150
IIGYVYDRLE DNDAHNLKNG MNIYGKGQWA PCIRYYKGKF YVLFGALDTG
160 170 180 190 200
KTYLFSSKNI TGPWERVEFN EYLHDPSLLF DDNGKAYIIY GGSEIRVKEL
210 220 230 240 250
MPDLKAINLK GLNKVIIKSK IDGLEEGSHA YKINGKYYIT TIRWEKGGIR
260 270 280 290 300
EECVYRADKI DGPYEGRVVL SDTLGYKNNG VAQGGLIDTP DGKWYAMLFQ
310 320 330 340 350
DHDAVGRVPV LVPVRWENGW PVFGDEKGKV PLKFVKPGQS SFETEVVKSD
360 370 380 390 400
EFYQEKAESN PRRFEVKRNA EITKDVELVI NNNFPRGTIG WKGREGAKLE
410 420 430 440 450
VVSEGNKNII HVYNRTGPRS GIQQNLTGRV EKGKKYKAVF RVKYVKGPDT
460 470 480 490 500
KEFILAAKIT SNGKESYQEL IKGFANKNEW TSISGTFTIS QDIETVYLFI
510 520 530 540 550
QTPVTEKPDK NNDLVDYFVE YVSVKEVLVT QKESEEVAPN GSVLNLTWQW
560 570 580 590 600
NHNPDNSKWS LLERKGFLRL KTCNVVSDIQ QARNTLTQRT LGPKCSGWIL
610 620 630 640 650
MDVRNMKDGD YAGLAAFQKE YGFIGVKKQD KEFYIVMVEK GKEVEYTKLQ
660 670 680 690 700
QSMVYLKIDF DFEIDKAYFY YSYNGINWIK FGSDLTMRYT IPHFMGYRFA
710 720 730 740 750
IFNFATKQTG GYVDIDFFKF SNKLTGEKTE EDFKVYLKED IIELRNDIDK
760 770 780 790 800
NYELTVSLNS LPKGKKATQI NILLKFPREL DVFEALVADK RIKNAVVLVE
810 820 830 840 850
KKGSDQALIN IKNIDTEVLD SGNRWIDLVN IKLKQREKLT ESTSDEIRIQ
860 870 880 890 900
SLTVEYEKEK INYRSESAVT KVKFVAPKTP VGKIPPNANP LIAHKFGADP
910 920 930 940 950
AVLVYKNRVY IYLTNDILEY DDNGNIKDNT YSKINKITII SSDDLINWTD
960 970 980 990 1000
HGEIEVAGPN GIAKWATQSW APSIAYKKIN GKDKFFLYFA NNASGIGVLT
1010 1020 1030 1040 1050
SDTPVGPWED PIGRPLISRS TPGVEGVVWL FDPAVLVDGD GKAYIYFGGG
1060 1070 1080 1090 1100
VPQGQDAMPN TARVMQLGDD MISVVGSAVT IPAPFMFEDS GINKIGNTYY
1110 1120 1130 1140 1150
YSYCTNFYSG ARPQGSPPAG VIAYMTSKSP MGPWEYKGVI LKNPGNFFGV
1160 1170 1180 1190 1200
GGNNHHQLFE FNGKWYIAYH AQTLAKDMGV AKGYRSPHIT QVEIENGKIK
1210 1220 1230 1240 1250
EVIADYRGIA QVKYFDPYKM VEAETFAWCA GISTKKANAS NSMCLTGIDS
1260 1270 1280 1290 1300
GDWIALSKVD FGNVGPQKFE AMVSNINGKG YIEIKIDSVD GKIIGVVEVQ
1310 1320 1330 1340
PQDSSSTHWV KVETNVDKVT GVHDVYFVFK GENEKNLFDM DCWKFVK
Length:1,347
Mass (Da):152,048
Last modified:January 1, 1998 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iE74D739A3183ED9E
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF005383 Genomic DNA Translation: AAB87371.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T30909

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF005383 Genomic DNA Translation: AAB87371.1
PIRiT30909

3D structure databases

ProteinModelPortaliO30426
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiCBM22 Carbohydrate-Binding Module Family 22
CBM6 Carbohydrate-Binding Module Family 6
GH43 Glycoside Hydrolase Family 43

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG4105DT9 Bacteria
COG3507 LUCA

Family and domain databases

Gene3Di2.115.10.20, 2 hits
2.60.120.260, 2 hits
InterProiView protein in InterPro
IPR006584 Cellulose-bd_IV
IPR003305 CenC_carb-bd
IPR005084 CMB_fam6
IPR013320 ConA-like_dom_sf
IPR008979 Galactose-bd-like_sf
IPR006710 Glyco_hydro_43
IPR023296 Glyco_hydro_beta-prop_sf
PfamiView protein in Pfam
PF02018 CBM_4_9, 1 hit
PF03422 CBM_6, 1 hit
PF04616 Glyco_hydro_43, 2 hits
SMARTiView protein in SMART
SM00606 CBD_IV, 1 hit
SUPFAMiSSF49785 SSF49785, 2 hits
SSF49899 SSF49899, 1 hit
SSF75005 SSF75005, 2 hits
PROSITEiView protein in PROSITE
PS51175 CBM6, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiO30426_CALSA
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: O30426
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: January 1, 1998
Last sequence update: January 1, 1998
Last modified: November 22, 2017
This is version 77 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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