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Protein

60S ribosomal protein L38

Gene

rpl-38

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-CEL-1799339 SRP-dependent cotranslational protein targeting to membrane
R-CEL-72689 Formation of a pool of free 40S subunits
R-CEL-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-CEL-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-CEL-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L38
Gene namesi
Name:rpl-38
ORF Names:C06B8.8
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiC06B8.8 ; CE20485 ; WBGene00004452 ; rpl-38

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002154381 – 7060S ribosomal protein L38Add BLAST70

Proteomic databases

EPDiO17570
PaxDbiO17570
PeptideAtlasiO17570
PRIDEiO17570

Expressioni

Gene expression databases

BgeeiWBGene00004452

Interactioni

Protein-protein interaction databases

BioGridi45039, 1 interactor
IntActiO17570, 1 interactor
STRINGi6239.C06B8.8.4

Structurei

3D structure databases

ProteinModelPortaliO17570
SMRiO17570
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3499 Eukaryota
ENOG4112229 LUCA
GeneTreeiENSGT00390000003718
HOGENOMiHOG000188979
InParanoidiO17570
KOiK02923
OMAiRDIKQFI
OrthoDBiEOG091G0SPL
PhylomeDBiO17570

Family and domain databases

Gene3Di3.30.720.90, 1 hit
InterProiView protein in InterPro
IPR002675 Ribosomal_L38e
IPR038464 Ribosomal_L38e_sf
PANTHERiPTHR10965 PTHR10965, 1 hit
PfamiView protein in Pfam
PF01781 Ribosomal_L38e, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD010361 Ribosomal_L38e, 1 hit

Sequencei

Sequence statusi: Complete.

O17570-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKEIKEIKD FLVKARRKDA KSVKIKKNSN NTKFKVRCAS YLYTLVVADK
60 70
DKAEKLKQSL PPGIQVKELK
Length:70
Mass (Da):8,077
Last modified:May 1, 1999 - v2
Checksum:i6C28CFD5B5F1FA8F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z81463 Genomic DNA Translation: CAB03853.1
PIRiT18996
RefSeqiNP_506860.1, NM_074459.4
UniGeneiCel.17981

Genome annotation databases

EnsemblMetazoaiC06B8.8.1; C06B8.8.1; WBGene00004452
C06B8.8.2; C06B8.8.2; WBGene00004452
C06B8.8.3; C06B8.8.3; WBGene00004452
C06B8.8.4; C06B8.8.4; WBGene00004452
C06B8.8.5; C06B8.8.5; WBGene00004452
C06B8.8.6; C06B8.8.6; WBGene00004452
C06B8.8.7; C06B8.8.7; WBGene00004452
GeneIDi180044
KEGGicel:CELE_C06B8.8
UCSCiC06B8.8.1 c. elegans

Similar proteinsi

Entry informationi

Entry nameiRL38_CAEEL
AccessioniPrimary (citable) accession number: O17570
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 1, 1999
Last modified: March 28, 2018
This is version 100 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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