UniProtKB - O15381 (NVL_HUMAN)
Nuclear valosin-containing protein-like
NVL
Functioni
Participates in the assembly of the telomerase holoenzyme and effecting of telomerase activity via its interaction with TERT (PubMed:22226966).
Involved in both early and late stages of the pre-rRNA processing pathways (PubMed:26166824).
Spatiotemporally regulates 60S ribosomal subunit biogenesis in the nucleolus (PubMed:15469983, PubMed:16782053, PubMed:29107693, PubMed:26456651).
Catalyzes the release of specific assembly factors, such as WDR74, from pre-60S ribosomal particles through the ATPase activity (PubMed:29107693, PubMed:26456651, PubMed:28416111).
7 PublicationsRegions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Nucleotide bindingi | 305 – 312 | ATP1 Publication | 8 | |
Nucleotide bindingi | 622 – 629 | ATP1 Publication | 8 |
GO - Molecular functioni
- ATP binding Source: UniProtKB
- ATP hydrolysis activity Source: GO_Central
- preribosome binding Source: UniProtKB
- RNA binding Source: UniProtKB
GO - Biological processi
- positive regulation of protein binding Source: UniProtKB
- positive regulation of telomerase activity Source: UniProtKB
- regulation of protein localization to nucleolus Source: UniProtKB
- ribosomal large subunit biogenesis Source: UniProtKB
- ribosome biogenesis Source: UniProtKB
- rRNA processing Source: UniProtKB
Keywordsi
Biological process | Ribosome biogenesis |
Ligand | ATP-binding, Nucleotide-binding |
Enzyme and pathway databases
PathwayCommonsi | O15381 |
SignaLinki | O15381 |
Names & Taxonomyi
Protein namesi | Recommended name: Nuclear valosin-containing protein-likeCuratedShort name: NVLp Short name: Nuclear VCP-like protein |
Gene namesi | |
Organismi | Homo sapiens (Human) |
Taxonomic identifieri | 9606 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Proteomesi |
|
Organism-specific databases
HGNCi | HGNC:8070, NVL |
MIMi | 602426, gene |
neXtProti | NX_O15381 |
VEuPathDBi | HostDB:ENSG00000143748 |
Subcellular locationi
Nucleus
- nucleoplasm 1 Publication
Nucleus
- nucleolus 5 Publications
- nucleoplasm 1 Publication
Note: Expressed predominantly in the nucleolus. Associates with pre-ribosomal particles in the nucleus.1 Publication
Nucleus
- nucleolus Source: UniProtKB
- nucleoplasm Source: UniProtKB
- nucleus Source: UniProtKB
- telomerase holoenzyme complex Source: UniProtKB
Other locations
- membrane Source: UniProtKB
Keywords - Cellular componenti
NucleusPathology & Biotechi
Mutagenesis
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Mutagenesisi | 51 – 52 | KR → AA: Loss of nucleolar localization and interaction with RPL5. 1 Publication | 2 | |
Mutagenesisi | 85 – 86 | KR → AA: Decreased nuclear localization. Complete loss of nuclear localization; when associated with 218-A--A-220 and 230-A--A-232. 1 Publication | 2 | |
Mutagenesisi | 173 | W → A: Abolishes binding to MTREX. 1 Publication | 1 | |
Mutagenesisi | 175 | I → E: Impairs binding to MTREX. 1 Publication | 1 | |
Mutagenesisi | 176 | D → A: Impairs the binding of MTREX. 1 Publication | 1 | |
Mutagenesisi | 218 – 220 | KRK → AAA: Decreased nuclear localization; when associated with 230-A--A-232. Complete loss of nuclear localization; when associated with 85-A-A-86 and 230-A--A-232. 1 Publication | 3 | |
Mutagenesisi | 230 – 232 | RKK → AAA: Decreased nuclear localization when associated with 218-A--A-220. Complete loss of nuclear localization; when associated with 85-A-A-86 and 218-A--A-220. 1 Publication | 3 | |
Mutagenesisi | 311 | K → M: Loss of ATP-binding. Significant reduction in interaction with TERT and in telomerase activity. Loss of interaction with MTREX. 1 Publication2 Publications | 1 | |
Mutagenesisi | 365 | E → Q: Decreases 60S ribosomes synthesis. Strongly decreases 60S ribosomal subunit synthesis, enhances interaction with WDR74 and increases association of WDR74 and MTREX as well as induces partial migration of WDR74 to the nucleoplasm; when associated with Q-682. 2 Publications | 1 | |
Mutagenesisi | 628 | K → M: Loss of ATP-binding. No effect on interaction with TERT, MTREX and RPL5 and on telomerase activity. Significant reduction in the level of the 60S ribosomal subunit. 1 Publication4 Publications | 1 | |
Mutagenesisi | 682 | E → Q: Decreases 60S ribosomes synthesis. Strongly decreases 60S ribosomal subunit synthesis, enhances interaction with WDR74 and increases association of WDR74 and MTREX as well as induces partial migration of WDR74 to the nucleoplasm; when associated with Q-365. 2 Publications | 1 |
Organism-specific databases
DisGeNETi | 4931 |
OpenTargetsi | ENSG00000143748 |
PharmGKBi | PA31857 |
Miscellaneous databases
Pharosi | O15381, Tbio |
Genetic variation databases
BioMutai | NVL |
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000084588 | 1 – 856 | Nuclear valosin-containing protein-likeAdd BLAST | 856 |
Amino acid modifications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Modified residuei | 70 | N6-acetyllysineBy similarity | 1 | |
Modified residuei | 134 | PhosphoserineCombined sources | 1 | |
Modified residuei | 138 | PhosphothreonineCombined sources | 1 | |
Modified residuei | 156 | N6-acetyllysineBy similarity | 1 | |
Modified residuei | 191 | PhosphoserineBy similarity | 1 | |
Cross-linki | 208 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)Combined sources | ||
Modified residuei | 211 | PhosphoserineCombined sources | 1 | |
Modified residuei | 215 | PhosphoserineCombined sources | 1 |
Keywords - PTMi
Acetylation, Isopeptide bond, Phosphoprotein, Ubl conjugationProteomic databases
EPDi | O15381 |
jPOSTi | O15381 |
MassIVEi | O15381 |
MaxQBi | O15381 |
PaxDbi | O15381 |
PeptideAtlasi | O15381 |
PRIDEi | O15381 |
ProteomicsDBi | 4595 4771 48620 [O15381-1] 48621 [O15381-2] 48622 [O15381-3] |
2D gel databases
SWISS-2DPAGEi | O15381 |
PTM databases
GlyGeni | O15381, 1 site, 1 O-linked glycan (1 site) |
iPTMneti | O15381 |
MetOSitei | O15381 |
PhosphoSitePlusi | O15381 |
Expressioni
Tissue specificityi
Gene expression databases
Bgeei | ENSG00000143748, Expressed in sural nerve and 164 other tissues |
ExpressionAtlasi | O15381, baseline and differential |
Genevisiblei | O15381, HS |
Organism-specific databases
HPAi | ENSG00000143748, Low tissue specificity |
Interactioni
Subunit structurei
Interacts with NCL/nucleolin (PubMed:21474449). Isoform 1 and isoform 2 interact with TERT and isoform 1 exhibits a higher binding affinity for TERT compared to isoform 2 (PubMed:22226966).
Isoform 1 interacts with MTREX in an ATP-dependent manner; the interaction is required to associate NVL with nuclear RNA exosome (PubMed:26166824, PubMed:31358741, PubMed:16782053).
Isoform 1 interacts with RPL5 in an ATP-dependent manner (PubMed:15469983).
Interacts with WDR74 (through WDR repeats); the interaction is independent of RNA or pre-60S ribosome particles (PubMed:28416111).
7 PublicationsBinary interactionsi
Isoform 5 [O15381-5]
Protein-protein interaction databases
BioGRIDi | 110985, 128 interactors |
IntActi | O15381, 62 interactors |
MINTi | O15381 |
STRINGi | 9606.ENSP00000281701 |
Miscellaneous databases
RNActi | O15381, protein |
Structurei
Secondary structure
3D structure databases
SMRi | O15381 |
ModBasei | Search... |
PDBe-KBi | Search... |
Miscellaneous databases
EvolutionaryTracei | O15381 |
Family & Domainsi
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1 – 220 | Interaction with RPL51 PublicationAdd BLAST | 220 | |
Regioni | 84 – 175 | DisorderedSequence analysisAdd BLAST | 92 | |
Regioni | 197 – 236 | DisorderedSequence analysisAdd BLAST | 40 | |
Regioni | 267 – 474 | Interaction with WDR741 PublicationAdd BLAST | 208 | |
Regioni | 496 – 523 | DisorderedSequence analysisAdd BLAST | 28 |
Motif
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Motifi | 49 – 52 | Nucleolar localization signal1 Publication | 4 | |
Motifi | 85 – 88 | Nuclear localization signal1 Publication | 4 | |
Motifi | 218 – 232 | Nuclear localization signal1 PublicationAdd BLAST | 15 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 110 – 162 | Polar residuesSequence analysisAdd BLAST | 53 | |
Compositional biasi | 199 – 221 | Basic and acidic residuesSequence analysisAdd BLAST | 23 | |
Compositional biasi | 496 – 512 | Basic and acidic residuesSequence analysisAdd BLAST | 17 |
Sequence similaritiesi
Keywords - Domaini
RepeatPhylogenomic databases
eggNOGi | KOG0733, Eukaryota |
GeneTreei | ENSGT00570000079239 |
HOGENOMi | CLU_000688_12_3_1 |
InParanoidi | O15381 |
OMAi | TCAIKRI |
OrthoDBi | 194195at2759 |
PhylomeDBi | O15381 |
TreeFami | TF314681 |
Family and domain databases
Gene3Di | 1.10.10.2010, 1 hit 3.40.50.300, 2 hits |
InterProi | View protein in InterPro IPR003593, AAA+_ATPase IPR041569, AAA_lid_3 IPR003959, ATPase_AAA_core IPR003960, ATPase_AAA_CS IPR038100, NLV2_N_sf IPR031996, NVL2_nucleolin-bd IPR027417, P-loop_NTPase |
Pfami | View protein in Pfam PF00004, AAA, 2 hits PF17862, AAA_lid_3, 2 hits PF16725, Nucleolin_bd, 1 hit |
SMARTi | View protein in SMART SM00382, AAA, 2 hits |
SUPFAMi | SSF52540, SSF52540, 2 hits |
PROSITEi | View protein in PROSITE PS00674, AAA, 2 hits |
s (5+)i Sequence
Sequence statusi: Complete.
This entry describes 5 produced by isoformsialternative splicing. AlignAdd to basketThis entry has 5 described isoforms and 7 potential isoforms that are computationally mapped.Show allAlign All
This isoform has been chosen as the sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. canonicali
10 20 30 40 50
MKPRPAGFVD NKLKQRVIQY LTSNKCGKYV DIGVLASDLQ RVYSIDYGRR
60 70 80 90 100
KRNAFRIQVE KVFSIISSEK ELKNLTELED EHLAKRARQG EEDNEYTESY
110 120 130 140 150
SDDDSSMEDY PDPQSANHMN SSLLSLYRKG NPDSVSNTPE MEQRETTSST
160 170 180 190 200
PRISSKTGSI PLKTPAKDSE GGWFIDKTPS VKKDSFFLDL SCEKSNPKKP
210 220 230 240 250
ITEIQDSKDS SLLESDMKRK GKLKNKGSKR KKEDLQEVDG EIEAVLQKKA
260 270 280 290 300
KARGLEFQIS NVKFEDVGGN DMTLKEVCKM LIHMRHPEVY HHLGVVPPRG
310 320 330 340 350
VLLHGPPGCG KTLLAHAIAG ELDLPILKVA APEIVSGVSG ESEQKLRELF
360 370 380 390 400
EQAVSNAPCI IFIDEIDAIT PKREVASKDM ERRIVAQLLT CMDDLNNVAA
410 420 430 440 450
TARVLVIGAT NRPDSLDPAL RRAGRFDREI CLGIPDEASR ERILQTLCRK
460 470 480 490 500
LRLPQAFDFC HLAHLTPGFV GADLMALCRE AAMCAVNRVL MKLQEQQKKN
510 520 530 540 550
PEMEDLPSKG VQEERLGTEP TSETQDELQR LLGLLRDQDP LSEEQMQGLC
560 570 580 590 600
IELNDFIVAL SSVQPSAKRE GFVTVPNVTW ADIGALEDIR EELTMAILAP
610 620 630 640 650
VRNPDQFKAL GLVTPAGVLL AGPPGCGKTL LAKAVANESG LNFISVKGPE
660 670 680 690 700
LLNMYVGESE RAVRQVFQRA KNSAPCVIFF DEVDALCPRR SDRETGASVR
710 720 730 740 750
VVNQLLTEMD GLEARQQVFI MAATNRPDII DPAILRPGRL DKTLFVGLPP
760 770 780 790 800
PADRLAILKT ITKNGTKPPL DADVNLEAIA GDLRCDCYTG ADLSALVREA
810 820 830 840 850
SICALRQEMA RQKSGNEKGE LKVSHKHFEE AFKKVRSSIS KKDQIMYERL
QESLSR
Computationally mapped potential isoform sequencesi
There are 7 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketE7EWK7 | E7EWK7_HUMAN | Nuclear valosin-containing protein-... | NVL | 184 | Annotation score: | ||
E9PGD8 | E9PGD8_HUMAN | Nuclear valosin-containing protein-... | NVL | 175 | Annotation score: | ||
E9PH71 | E9PH71_HUMAN | Nuclear valosin-containing protein-... | NVL | 296 | Annotation score: | ||
C9J6P7 | C9J6P7_HUMAN | Nuclear valosin-containing protein-... | NVL | 180 | Annotation score: | ||
C9JP83 | C9JP83_HUMAN | Nuclear valosin-containing protein-... | NVL | 171 | Annotation score: | ||
F8WF01 | F8WF01_HUMAN | Nuclear valosin-containing protein-... | NVL | 53 | Annotation score: | ||
A0A087WV72 | A0A087WV72_HUMAN | Nuclear valosin-containing protein-... | NVL | 48 | Annotation score: |
Natural variant
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Natural variantiVAR_048109 | 295 | V → I. Corresponds to variant dbSNP:rs12084919Ensembl. | 1 | |
Natural variantiVAR_015890 | 359 | C → G1 Publication | 1 | |
Natural variantiVAR_048110 | 404 | V → I. Corresponds to variant dbSNP:rs34631151Ensembl. | 1 |
Alternative sequence
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Alternative sequenceiVSP_045334 | 1 – 216 | Missing in isoform 4. 1 PublicationAdd BLAST | 216 | |
Alternative sequenceiVSP_007771 | 1 – 106 | Missing in isoform 2 and isoform 3. 2 PublicationsAdd BLAST | 106 | |
Alternative sequenceiVSP_007772 | 115 – 205 | Missing in isoform 3 and isoform 5. 2 PublicationsAdd BLAST | 91 | |
Alternative sequenceiVSP_045335 | 320 | G → GAECSGMITAHCSFDFSGSN DPPASASQ in isoform 4. 1 Publication | 1 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | U68140 mRNA Translation: AAB70457.1 U78772 mRNA Translation: AAB70460.1 AK297396 mRNA Translation: BAG59836.1 AK298244 mRNA Translation: BAG60510.1 AC092809 Genomic DNA No translation available. BC012105 mRNA Translation: AAH12105.1 |
CCDSi | CCDS1541.1 [O15381-1] CCDS1542.1 [O15381-2] CCDS58062.1 [O15381-4] CCDS58063.1 [O15381-5] |
RefSeqi | NP_001230075.1, NM_001243146.1 [O15381-4] NP_001230076.1, NM_001243147.1 [O15381-5] NP_002524.2, NM_002533.3 [O15381-1] NP_996671.1, NM_206840.2 [O15381-2] |
Genome annotation databases
Ensembli | ENST00000281701; ENSP00000281701; ENSG00000143748 ENST00000340871; ENSP00000341362; ENSG00000143748 [O15381-4] ENST00000391875; ENSP00000375747; ENSG00000143748 [O15381-2] ENST00000469075; ENSP00000417826; ENSG00000143748 [O15381-5] ENST00000469968; ENSP00000419420; ENSG00000143748 [O15381-3] ENST00000482491; ENSP00000417213; ENSG00000143748 [O15381-4] |
GeneIDi | 4931 |
KEGGi | hsa:4931 |
MANE-Selecti | ENST00000281701.11; ENSP00000281701.6; NM_002533.4; NP_002524.2 |
UCSCi | uc001hok.4, human [O15381-1] |
Keywords - Coding sequence diversityi
Alternative splicingSimilar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | U68140 mRNA Translation: AAB70457.1 U78772 mRNA Translation: AAB70460.1 AK297396 mRNA Translation: BAG59836.1 AK298244 mRNA Translation: BAG60510.1 AC092809 Genomic DNA No translation available. BC012105 mRNA Translation: AAH12105.1 |
CCDSi | CCDS1541.1 [O15381-1] CCDS1542.1 [O15381-2] CCDS58062.1 [O15381-4] CCDS58063.1 [O15381-5] |
RefSeqi | NP_001230075.1, NM_001243146.1 [O15381-4] NP_001230076.1, NM_001243147.1 [O15381-5] NP_002524.2, NM_002533.3 [O15381-1] NP_996671.1, NM_206840.2 [O15381-2] |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
2X8A | X-ray | 2.60 | A | 574-845 | [»] | |
6RO1 | X-ray | 3.07 | B | 167-216 | [»] | |
SMRi | O15381 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
BioGRIDi | 110985, 128 interactors |
IntActi | O15381, 62 interactors |
MINTi | O15381 |
STRINGi | 9606.ENSP00000281701 |
PTM databases
GlyGeni | O15381, 1 site, 1 O-linked glycan (1 site) |
iPTMneti | O15381 |
MetOSitei | O15381 |
PhosphoSitePlusi | O15381 |
Genetic variation databases
BioMutai | NVL |
2D gel databases
SWISS-2DPAGEi | O15381 |
Proteomic databases
EPDi | O15381 |
jPOSTi | O15381 |
MassIVEi | O15381 |
MaxQBi | O15381 |
PaxDbi | O15381 |
PeptideAtlasi | O15381 |
PRIDEi | O15381 |
ProteomicsDBi | 4595 4771 48620 [O15381-1] 48621 [O15381-2] 48622 [O15381-3] |
Protocols and materials databases
Antibodypediai | 34637, 216 antibodies from 27 providers |
DNASUi | 4931 |
Genome annotation databases
Ensembli | ENST00000281701; ENSP00000281701; ENSG00000143748 ENST00000340871; ENSP00000341362; ENSG00000143748 [O15381-4] ENST00000391875; ENSP00000375747; ENSG00000143748 [O15381-2] ENST00000469075; ENSP00000417826; ENSG00000143748 [O15381-5] ENST00000469968; ENSP00000419420; ENSG00000143748 [O15381-3] ENST00000482491; ENSP00000417213; ENSG00000143748 [O15381-4] |
GeneIDi | 4931 |
KEGGi | hsa:4931 |
MANE-Selecti | ENST00000281701.11; ENSP00000281701.6; NM_002533.4; NP_002524.2 |
UCSCi | uc001hok.4, human [O15381-1] |
Organism-specific databases
CTDi | 4931 |
DisGeNETi | 4931 |
GeneCardsi | NVL |
HGNCi | HGNC:8070, NVL |
HPAi | ENSG00000143748, Low tissue specificity |
MIMi | 602426, gene |
neXtProti | NX_O15381 |
OpenTargetsi | ENSG00000143748 |
PharmGKBi | PA31857 |
VEuPathDBi | HostDB:ENSG00000143748 |
GenAtlasi | Search... |
Phylogenomic databases
eggNOGi | KOG0733, Eukaryota |
GeneTreei | ENSGT00570000079239 |
HOGENOMi | CLU_000688_12_3_1 |
InParanoidi | O15381 |
OMAi | TCAIKRI |
OrthoDBi | 194195at2759 |
PhylomeDBi | O15381 |
TreeFami | TF314681 |
Enzyme and pathway databases
PathwayCommonsi | O15381 |
SignaLinki | O15381 |
Miscellaneous databases
BioGRID-ORCSi | 4931, 761 hits in 1051 CRISPR screens |
ChiTaRSi | NVL, human |
EvolutionaryTracei | O15381 |
GeneWikii | NVL_(gene) |
GenomeRNAii | 4931 |
Pharosi | O15381, Tbio |
PROi | PR:O15381 |
RNActi | O15381, protein |
SOURCEi | Search... |
Gene expression databases
Bgeei | ENSG00000143748, Expressed in sural nerve and 164 other tissues |
ExpressionAtlasi | O15381, baseline and differential |
Genevisiblei | O15381, HS |
Family and domain databases
Gene3Di | 1.10.10.2010, 1 hit 3.40.50.300, 2 hits |
InterProi | View protein in InterPro IPR003593, AAA+_ATPase IPR041569, AAA_lid_3 IPR003959, ATPase_AAA_core IPR003960, ATPase_AAA_CS IPR038100, NLV2_N_sf IPR031996, NVL2_nucleolin-bd IPR027417, P-loop_NTPase |
Pfami | View protein in Pfam PF00004, AAA, 2 hits PF17862, AAA_lid_3, 2 hits PF16725, Nucleolin_bd, 1 hit |
SMARTi | View protein in SMART SM00382, AAA, 2 hits |
SUPFAMi | SSF52540, SSF52540, 2 hits |
PROSITEi | View protein in PROSITE PS00674, AAA, 2 hits |
MobiDBi | Search... |
Entry informationi
Entry namei | NVL_HUMAN | |
Accessioni | O15381Primary (citable) accession number: O15381 Secondary accession number(s): B4DMC4, B4DP98, Q96EM7 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | July 11, 2003 |
Last sequence update: | January 1, 1998 | |
Last modified: | February 23, 2022 | |
This is version 179 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Chordata Protein Annotation Program | |
Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. |
Miscellaneousi
Keywords - Technical termi
3D-structure, Reference proteomeDocuments
- Human chromosome 1
Human chromosome 1: entries, gene names and cross-references to MIM - Human entries with genetic variants
List of human entries with genetic variants - Human variants curated from literature reports
Index of human variants curated from literature reports - MIM cross-references
Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot - PDB cross-references
Index of Protein Data Bank (PDB) cross-references - SIMILARITY comments
Index of protein domains and families