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Protein

Ribosome biogenesis protein tsr1

Gene

tsr1

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Required for 40S ribosomal subunit synthesis. Required for normal export of the pre-40S particles from the nucleus to the cytoplasm (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processRibosome biogenesis

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome biogenesis protein tsr1
Gene namesi
Name:tsr1
ORF Names:SPAC23H4.15
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:SPAC23H4.15
PomBaseiSPAC23H4.15 tsr1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003391271 – 783Ribosome biogenesis protein tsr1Add BLAST783

Proteomic databases

MaxQBiO13956
PaxDbiO13956
PRIDEiO13956

PTM databases

iPTMnetiO13956

Interactioni

Protein-protein interaction databases

STRINGi4896.SPAC23H4.15.1

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini80 – 249Bms1-type GAdd BLAST170

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi396 – 488Glu-richAdd BLAST93

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000165026
InParanoidiO13956
KOiK14799
OMAiYFKATFD
OrthoDBiEOG092C16GO
PhylomeDBiO13956

Family and domain databases

InterProiView protein in InterPro
IPR012948 AARP2CN
IPR007034 BMS1_TSR1_C
IPR030387 G_Bms1/Tsr1_dom
PfamiView protein in Pfam
PF08142 AARP2CN, 1 hit
PF04950 RIBIOP_C, 1 hit
SMARTiView protein in SMART
SM00785 AARP2CN, 1 hit
SM01362 DUF663, 1 hit
PROSITEiView protein in PROSITE
PS51714 G_BMS1, 1 hit

Sequencei

Sequence statusi: Complete.

O13956-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAHHHRSTFK AKKPFKSKHA SKSSLKEKYK NEVEPHRSGP KNIVHTSTKA
60 70 80 90 100
DRRNTAKQIQ LNKRTEVAMN NRIFGGKNGA PKVITIVPLC NNVDSWNVLT
110 120 130 140 150
NLLRSIDPEA SLPKFDKDSI SYSTTIDRFK QNLLFLLPKR EFYSLIDACK
160 170 180 190 200
VSDYVIFVLS AVQEVDEFGE LIVRTTQGQG ISSVLSMVHD LSEVDSLKTR
210 220 230 240 250
NEVKKSLQSF MNFFFSDQER VFAADVSQDA LNVMRALCTS HPRGIHWRDS
260 270 280 290 300
RSYLLSQEIS YSNGNLLVRG IVRGKGLDPN RLIHIQGFGD FAINRIYEAP
310 320 330 340 350
QGIQNSRGIS MDEDTNLTGG LVELCSPTQE QDSLESLGPI IDDMDTDMDS
360 370 380 390 400
EVGKEASRGV RLDDFYYFDD EEEPVAVAKR VPKGTSTYQA TWIPDEDEES
410 420 430 440 450
DQYSDVEDTE VIIEDQDNQE ISNHVAEEKI DSDEEETIDD AKSEMFVDLS
460 470 480 490 500
EEEEVRQYEE YRKKQKELQE ELEFPDEVEL QPNELARERF KKYRGLRSLY
510 520 530 540 550
TSQWDADEYD PNEPREWRQL FKFENYRNLK NKFLKQPFIG EAKPGKAVYV
560 570 580 590 600
ELRNVPIEIF EYYNKPWNLL VLYSLLQYEN KLTVSQFTAM QHSEYEEPIE
610 620 630 640 650
SKEELLLQIG PRRFMVRPLY SDPTASGASN NLQKYHRYLP PKQAVIASVI
660 670 680 690 700
SPIVFGNVPI IMFKKSSDNS LRLAATGSYV NCDTNSVIAK RAVLTGHPFK
710 720 730 740 750
VHKKLVTIRY MFFNPEDVIW FKPIQLFTKQ GRTGYIKEPL GTHGYFKATF
760 770 780
NGKITVQDTV AMSLYKRMYP LPCELFKVTD IDS
Length:783
Mass (Da):90,126
Last modified:January 1, 1998 - v1
Checksum:i67BDC6EC0AA7D346
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA Translation: CAB11669.1
PIRiT38313
RefSeqiNP_593391.1, NM_001018823.2

Genome annotation databases

EnsemblFungiiSPAC23H4.15.1; SPAC23H4.15.1:pep; SPAC23H4.15
GeneIDi2541779
KEGGispo:SPAC23H4.15

Similar proteinsi

Entry informationi

Entry nameiTSR1_SCHPO
AccessioniPrimary (citable) accession number: O13956
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 10, 2008
Last sequence update: January 1, 1998
Last modified: June 20, 2018
This is version 94 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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