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UniProtKB - O07592 (YHDW_BACSU)
Protein
Putative glycerophosphodiester phosphodiesterase YhdW
Gene
yhdW
Organism
Bacillus subtilis (strain 168)
Status
Functioni
Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols.
By similarityCatalytic activityi
- EC:3.1.4.46
Cofactori
Ca2+By similarityNote: Binds 1 Ca2+ ion per subunit.By similarity
Sites
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Metal bindingi | 33 | CalciumBy similarity | 1 | |
Metal bindingi | 35 | CalciumBy similarity | 1 | |
Metal bindingi | 107 | CalciumBy similarity | 1 |
GO - Molecular functioni
- glycerophosphodiester phosphodiesterase activity Source: UniProtKB-EC
- metal ion binding Source: UniProtKB-KW
GO - Biological processi
- glycerol metabolic process Source: UniProtKB-KW
- lipid metabolic process Source: InterPro
Keywordsi
Molecular function | Hydrolase |
Biological process | Glycerol metabolism |
Ligand | Calcium, Metal-binding |
Enzyme and pathway databases
BioCyci | BSUB:BSU09620-MONOMER |
Names & Taxonomyi
Protein namesi | Recommended name: Putative glycerophosphodiester phosphodiesterase YhdW (EC:3.1.4.46)Short name: Glycerophosphoryl diester phosphodiesterase |
Gene namesi | Name:yhdW Ordered Locus Names:BSU09620 |
Organismi | Bacillus subtilis (strain 168) |
Taxonomic identifieri | 224308 [NCBI] |
Taxonomic lineagei | Bacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Bacillus › |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000387993 | 1 – 243 | Putative glycerophosphodiester phosphodiesterase YhdWAdd BLAST | 243 |
Proteomic databases
PaxDbi | O07592 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 1 – 238 | GP-PDEAdd BLAST | 238 |
Sequence similaritiesi
Belongs to the glycerophosphoryl diester phosphodiesterase family.Curated
Phylogenomic databases
eggNOGi | COG0584, Bacteria |
InParanoidi | O07592 |
OMAi | FTDQINP |
PhylomeDBi | O07592 |
Family and domain databases
Gene3Di | 3.20.20.190, 1 hit |
InterProi | View protein in InterPro IPR030395, GP_PDE_dom IPR017946, PLC-like_Pdiesterase_TIM-brl |
Pfami | View protein in Pfam PF03009, GDPD, 1 hit |
SUPFAMi | SSF51695, SSF51695, 1 hit |
PROSITEi | View protein in PROSITE PS51704, GP_PDE, 1 hit |
i Sequence
Sequence statusi: Complete.
O07592-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MYIIAHRGAS GYAPENTIAA FDLAVKMNAD MIELDVQLTK DRQIVVIHDD
60 70 80 90 100
RVDRTTNGSG FVKDFTLEEL QKLDAGSWYG PAFQGERIPT LEAVLKRYHK
110 120 130 140 150
KIGLLIELKG HPSQVGIEEE VGQLLGQFSF SINNIVQSFQ FRSVQRFREL
160 170 180 190 200
YPSIPTAVIT RPNFGMLSRN QMKAFRSFAN YVNIKHTRLN RLMIGSINKN
210 220 230 240
GLNIFAWTVN NQKTAAKLQA MGVDGIVTDY PDFIIKDGKH ENI
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | Y14082 Genomic DNA Translation: CAA74507.1 AL009126 Genomic DNA Translation: CAB12801.1 |
PIRi | E69827 |
RefSeqi | NP_388843.1, NC_000964.3 WP_003244958.1, NZ_JNCM01000035.1 |
Genome annotation databases
EnsemblBacteriai | CAB12801; CAB12801; BSU_09620 |
GeneIDi | 939751 |
KEGGi | bsu:BSU09620 |
PATRICi | fig|224308.179.peg.1035 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | Y14082 Genomic DNA Translation: CAA74507.1 AL009126 Genomic DNA Translation: CAB12801.1 |
PIRi | E69827 |
RefSeqi | NP_388843.1, NC_000964.3 WP_003244958.1, NZ_JNCM01000035.1 |
3D structure databases
SMRi | O07592 |
ModBasei | Search... |
Protein-protein interaction databases
STRINGi | 224308.BSU09620 |
Proteomic databases
PaxDbi | O07592 |
Protocols and materials databases
DNASUi | 939751 |
Genome annotation databases
EnsemblBacteriai | CAB12801; CAB12801; BSU_09620 |
GeneIDi | 939751 |
KEGGi | bsu:BSU09620 |
PATRICi | fig|224308.179.peg.1035 |
Phylogenomic databases
eggNOGi | COG0584, Bacteria |
InParanoidi | O07592 |
OMAi | FTDQINP |
PhylomeDBi | O07592 |
Enzyme and pathway databases
BioCyci | BSUB:BSU09620-MONOMER |
Family and domain databases
Gene3Di | 3.20.20.190, 1 hit |
InterProi | View protein in InterPro IPR030395, GP_PDE_dom IPR017946, PLC-like_Pdiesterase_TIM-brl |
Pfami | View protein in Pfam PF03009, GDPD, 1 hit |
SUPFAMi | SSF51695, SSF51695, 1 hit |
PROSITEi | View protein in PROSITE PS51704, GP_PDE, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | YHDW_BACSU | |
Accessioni | O07592Primary (citable) accession number: O07592 Secondary accession number(s): Q796W8 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | November 3, 2009 |
Last sequence update: | July 1, 1997 | |
Last modified: | February 23, 2022 | |
This is version 105 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- SIMILARITY comments
Index of protein domains and families