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Entry version 114 (07 Apr 2021)
Sequence version 1 (01 Jul 1997)
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Protein

Nucleotide-binding protein YvcJ

Gene

yvcJ

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Displays ATPase and GTPase activities. Can also hydrolyze pNPP. May affect the expression of competence via the phosphorylation of a cellular component.

1 Publication

<p>This subsection of the 'Function' section describes biophysical and chemical properties, such as maximal absorption, kinetic parameters, pH dependence, redox potentials and temperature dependence.<p><a href='/help/biophysicochemical_properties' target='_top'>More...</a></p>Kineticsi

GTP is hydrolyzed with a 2-fold higher efficiency than ATP.1 Publication

      Regions

      Feature keyPosition(s)DescriptionActionsGraphical viewLength
      <p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi16 – 23ATPUniRule annotation8
      Nucleotide bindingi67 – 70GTPUniRule annotation4

      <p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

      <p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

      LigandATP-binding, GTP-binding, Nucleotide-binding

      Enzyme and pathway databases

      BioCyc Collection of Pathway/Genome Databases

      More...
      BioCyci
      BSUB:BSU34770-MONOMER

      <p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

      <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
      Recommended name:
      Nucleotide-binding protein YvcJUniRule annotation
      <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
      Name:yvcJ
      Ordered Locus Names:BSU34770
      <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBacillus subtilis (strain 168)
      <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri224308 [NCBI]
      <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
      <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
      • UP000001570 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

      <p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

      <p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

      Cells lacking this gene show a reduction in transformation efficiency and in fraction of cells that express competence.1 Publication

      <p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

      Molecule processing

      Feature keyPosition(s)DescriptionActionsGraphical viewLength
      <p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001076891 – 295Nucleotide-binding protein YvcJAdd BLAST295

      Proteomic databases

      jPOST - Japan Proteome Standard Repository/Database

      More...
      jPOSTi
      O06973

      PaxDb, a database of protein abundance averages across all three domains of life

      More...
      PaxDbi
      O06973

      PRoteomics IDEntifications database

      More...
      PRIDEi
      O06973

      <p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

      Protein-protein interaction databases

      Protein interaction database and analysis system

      More...
      IntActi
      O06973, 2 interactors

      STRING: functional protein association networks

      More...
      STRINGi
      224308.BSU34770

      <p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

      3D structure databases

      SWISS-MODEL Repository - a database of annotated 3D protein structure models

      More...
      SMRi
      O06973

      Database of comparative protein structure models

      More...
      ModBasei
      Search...

      <p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

      <p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

      Belongs to the RapZ-like family.UniRule annotation

      Phylogenomic databases

      evolutionary genealogy of genes: Non-supervised Orthologous Groups

      More...
      eggNOGi
      COG1660, Bacteria

      InParanoid: Eukaryotic Ortholog Groups

      More...
      InParanoidi
      O06973

      Identification of Orthologs from Complete Genome Data

      More...
      OMAi
      TVMSFGF

      Database for complete collections of gene phylogenies

      More...
      PhylomeDBi
      O06973

      Family and domain databases

      HAMAP database of protein families

      More...
      HAMAPi
      MF_00636, RapZ_like, 1 hit

      Integrated resource of protein families, domains and functional sites

      More...
      InterProi
      View protein in InterPro
      IPR027417, P-loop_NTPase
      IPR005337, RapZ-like

      The PANTHER Classification System

      More...
      PANTHERi
      PTHR30448, PTHR30448, 1 hit

      Pfam protein domain database

      More...
      Pfami
      View protein in Pfam
      PF03668, ATP_bind_2, 1 hit

      PIRSF; a whole-protein classification database

      More...
      PIRSFi
      PIRSF005052, P-loopkin, 1 hit

      Superfamily database of structural and functional annotation

      More...
      SUPFAMi
      SSF52540, SSF52540, 1 hit

      <p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

      <p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

      O06973-1 [UniParc]FASTAAdd to basket
      « Hide
              10         20         30         40         50
      MSVSESHDIQ LVIITGMSGA GKTVAIQSFE DLGYFCVDNL PPSLLPKFLE
      60 70 80 90 100
      LMKESNSKMS KVALVMDLRG REFFDRLIEA LDEMAENPWI TPRILFLDAK
      110 120 130 140 150
      DSILVTRYKE TRRSHPLAAT GLPLEGIALE RELLEELKGR SQIIYDTSDM
      160 170 180 190 200
      KPRDLREKIV KHFATNQGET FTVNVMSFGF KYGIPIDADL VFDVRFLPNP
      210 220 230 240 250
      YYIESMRPLT GKDKEVSSYV MKWNETQKFN EKLIDLLSFM LPSYKREGKS
      260 270 280 290
      QVVIAIGCTG GQHRSVTLAE NLADYFKKDY YTHVTHRDIE KRSRK
      Length:295
      Mass (Da):33,851
      Last modified:July 1, 1997 - v1
      <p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4D717DCB4459F92A
      GO

      Sequence databases

      Select the link destinations:

      EMBL nucleotide sequence database

      More...
      EMBLi

      GenBank nucleotide sequence database

      More...
      GenBanki

      DNA Data Bank of Japan; a nucleotide sequence database

      More...
      DDBJi
      Links Updated
      Z94043 Genomic DNA Translation: CAB08057.1
      AL009126 Genomic DNA Translation: CAB15482.1

      Protein sequence database of the Protein Information Resource

      More...
      PIRi
      H70031

      NCBI Reference Sequences

      More...
      RefSeqi
      NP_391357.1, NC_000964.3
      WP_003243903.1, NZ_JNCM01000033.1

      Genome annotation databases

      Ensembl bacterial and archaeal genome annotation project

      More...
      EnsemblBacteriai
      CAB15482; CAB15482; BSU_34770

      Database of genes from NCBI RefSeq genomes

      More...
      GeneIDi
      936532

      KEGG: Kyoto Encyclopedia of Genes and Genomes

      More...
      KEGGi
      bsu:BSU34770

      Pathosystems Resource Integration Center (PATRIC)

      More...
      PATRICi
      fig|224308.179.peg.3765

      <p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

      <p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

      Sequence databases

      Select the link destinations:
      EMBLi
      GenBanki
      DDBJi
      Links Updated
      Z94043 Genomic DNA Translation: CAB08057.1
      AL009126 Genomic DNA Translation: CAB15482.1
      PIRiH70031
      RefSeqiNP_391357.1, NC_000964.3
      WP_003243903.1, NZ_JNCM01000033.1

      3D structure databases

      SMRiO06973
      ModBaseiSearch...

      Protein-protein interaction databases

      IntActiO06973, 2 interactors
      STRINGi224308.BSU34770

      Proteomic databases

      jPOSTiO06973
      PaxDbiO06973
      PRIDEiO06973

      Genome annotation databases

      EnsemblBacteriaiCAB15482; CAB15482; BSU_34770
      GeneIDi936532
      KEGGibsu:BSU34770
      PATRICifig|224308.179.peg.3765

      Phylogenomic databases

      eggNOGiCOG1660, Bacteria
      InParanoidiO06973
      OMAiTVMSFGF
      PhylomeDBiO06973

      Enzyme and pathway databases

      BioCyciBSUB:BSU34770-MONOMER

      Family and domain databases

      HAMAPiMF_00636, RapZ_like, 1 hit
      InterProiView protein in InterPro
      IPR027417, P-loop_NTPase
      IPR005337, RapZ-like
      PANTHERiPTHR30448, PTHR30448, 1 hit
      PfamiView protein in Pfam
      PF03668, ATP_bind_2, 1 hit
      PIRSFiPIRSF005052, P-loopkin, 1 hit
      SUPFAMiSSF52540, SSF52540, 1 hit

      MobiDB: a database of protein disorder and mobility annotations

      More...
      MobiDBi
      Search...

      <p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

      <p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiYVCJ_BACSU
      <p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: O06973
      <p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
      Last sequence update: July 1, 1997
      Last modified: April 7, 2021
      This is version 114 of the entry and version 1 of the sequence. See complete history.
      <p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
      Annotation programProkaryotic Protein Annotation Program

      <p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

      Keywords - Technical termi

      Reference proteome

      Documents

      1. SIMILARITY comments
        Index of protein domains and families
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