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Protein

Pentatricopeptide repeat-containing protein At5g27110

Gene

PCMP-E14

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At5g27110
Gene namesi
Name:PCMP-E14
Ordered Locus Names:At5g27110
ORF Names:A_TM021B04.2, T21B4.20
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G27110
TAIRilocus:2181201 AT5G27110

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003635351 – 691Pentatricopeptide repeat-containing protein At5g27110Add BLAST691

Proteomic databases

PaxDbiO04659
PRIDEiO04659

Expressioni

Gene expression databases

ExpressionAtlasiO04659 baseline and differential
GenevisibleiO04659 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G27110.1

Structurei

3D structure databases

ProteinModelPortaliO04659
SMRiO04659
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati38 – 68PPR 1Add BLAST31
Repeati70 – 104PPR 2Add BLAST35
Repeati106 – 140PPR 3Add BLAST35
Repeati141 – 171PPR 4Add BLAST31
Repeati172 – 206PPR 5Add BLAST35
Repeati207 – 241PPR 6Add BLAST35
Repeati242 – 272PPR 7Add BLAST31
Repeati273 – 307PPR 8Add BLAST35
Repeati308 – 342PPR 9Add BLAST35
Repeati343 – 373PPR 10Add BLAST31
Repeati374 – 408PPR 11Add BLAST35
Repeati409 – 443PPR 12Add BLAST35
Repeati444 – 474PPR 13Add BLAST31
Repeati475 – 509PPR 14Add BLAST35
Repeati510 – 540PPR 15Add BLAST31
Repeati546 – 576PPR 16Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni582 – 657Type E motifAdd BLAST76
Regioni658 – 688Type E(+) motifAdd BLAST31

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiO04659
OMAiGKFIHGY
OrthoDBiEOG093604LZ
PhylomeDBiO04659

Family and domain databases

Gene3Di1.25.40.10, 5 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 4 hits
PF13041 PPR_2, 4 hits
TIGRFAMsiTIGR00756 PPR, 6 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 16 hits

Sequencei

Sequence statusi: Complete.

O04659-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MESSKLLSLL RECTNSTKSL RRIKLVHQRI LTLGLRRDVV LCKSLINVYF
60 70 80 90 100
TCKDHCSARH VFENFDIRSD VYIWNSLMSG YSKNSMFHDT LEVFKRLLNC
110 120 130 140 150
SICVPDSFTF PNVIKAYGAL GREFLGRMIH TLVVKSGYVC DVVVASSLVG
160 170 180 190 200
MYAKFNLFEN SLQVFDEMPE RDVASWNTVI SCFYQSGEAE KALELFGRME
210 220 230 240 250
SSGFEPNSVS LTVAISACSR LLWLERGKEI HRKCVKKGFE LDEYVNSALV
260 270 280 290 300
DMYGKCDCLE VAREVFQKMP RKSLVAWNSM IKGYVAKGDS KSCVEILNRM
310 320 330 340 350
IIEGTRPSQT TLTSILMACS RSRNLLHGKF IHGYVIRSVV NADIYVNCSL
360 370 380 390 400
IDLYFKCGEA NLAETVFSKT QKDVAESWNV MISSYISVGN WFKAVEVYDQ
410 420 430 440 450
MVSVGVKPDV VTFTSVLPAC SQLAALEKGK QIHLSISESR LETDELLLSA
460 470 480 490 500
LLDMYSKCGN EKEAFRIFNS IPKKDVVSWT VMISAYGSHG QPREALYQFD
510 520 530 540 550
EMQKFGLKPD GVTLLAVLSA CGHAGLIDEG LKFFSQMRSK YGIEPIIEHY
560 570 580 590 600
SCMIDILGRA GRLLEAYEII QQTPETSDNA ELLSTLFSAC CLHLEHSLGD
610 620 630 640 650
RIARLLVENY PDDASTYMVL FNLYASGESW DAARRVRLKM KEMGLRKKPG
660 670 680 690
CSWIEMSDKV CHFFAEDRSH LRAENVYECL ALLSGHMESG Q
Length:691
Mass (Da):77,985
Last modified:February 10, 2009 - v2
Checksum:iC62990DACA792597
GO

Sequence cautioni

The sequence AAB61067 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF007271 Genomic DNA Translation: AAB61067.1 Sequence problems.
CP002688 Genomic DNA Translation: AED93651.1
PIRiT01808
RefSeqiNP_198063.1, NM_122593.2
UniGeneiAt.74336

Genome annotation databases

EnsemblPlantsiAT5G27110.1; AT5G27110.1; AT5G27110
GeneIDi832769
GrameneiAT5G27110.1; AT5G27110.1; AT5G27110
KEGGiath:AT5G27110

Similar proteinsi

Entry informationi

Entry nameiPP398_ARATH
AccessioniPrimary (citable) accession number: O04659
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: February 10, 2009
Last modified: April 25, 2018
This is version 96 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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