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UniProtKB - O04656 (NOP5C_ARATH)
Protein
Putative nucleolar protein 5-3
Gene
NOP5-3
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Functioni
Required for 60S ribosomal subunit biogenesis.
By similarityGO - Molecular functioni
- snoRNA binding Source: GO_Central
GO - Biological processi
- ribosome biogenesis Source: UniProtKB-KW
Keywordsi
Biological process | Ribosome biogenesis |
Names & Taxonomyi
Protein namesi | Recommended name: Putative nucleolar protein 5-3Alternative name(s): Nucleolar protein 58-3 |
Gene namesi | Name:NOP5-3 Synonyms:NOP58-3 Ordered Locus Names:At5g27140 ORF Names:T21B4_50, TM021B04.13 |
Organismi | Arabidopsis thaliana (Mouse-ear cress) |
Taxonomic identifieri | 3702 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Proteomesi |
|
Organism-specific databases
Araporti | AT5G27140 |
Subcellular locationi
Nucleus
- nucleolus By similarity
Nucleus
- nucleolus Source: UniProtKB-SubCell
Other locations
- box C/D RNP complex Source: GO_Central
- small-subunit processome Source: GO_Central
Keywords - Cellular componenti
NucleusPTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000219032 | 1 – 450 | Putative nucleolar protein 5-3Add BLAST | 450 |
Proteomic databases
PaxDbi | O04656 |
PRIDEi | O04656 |
ProteomicsDBi | 251070 |
Expressioni
Gene expression databases
ExpressionAtlasi | O04656, baseline and differential |
Genevisiblei | O04656, AT |
Interactioni
Protein-protein interaction databases
BioGRIDi | 18046, 37 interactors |
STRINGi | 3702.AT5G27140.1 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 252 – 370 | NopPROSITE-ProRule annotationAdd BLAST | 119 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 375 – 423 | DisorderedSequence analysisAdd BLAST | 49 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 381 – 423 | Basic and acidic residuesSequence analysisAdd BLAST | 43 |
Sequence similaritiesi
Belongs to the NOP5/NOP56 family.Curated
Phylogenomic databases
eggNOGi | KOG2572, Eukaryota |
HOGENOMi | CLU_015495_5_2_1 |
InParanoidi | O04656 |
OrthoDBi | 632707at2759 |
PhylomeDBi | O04656 |
Family and domain databases
Gene3Di | 1.10.246.90, 1 hit |
InterProi | View protein in InterPro IPR045056, Nop56/Nop58 IPR012974, NOP5_N IPR042239, Nop_C IPR002687, Nop_dom IPR036070, Nop_dom_sf IPR012976, NOSIC |
PANTHERi | PTHR10894, PTHR10894, 2 hits |
Pfami | View protein in Pfam PF01798, Nop, 1 hit PF08156, NOP5NT, 1 hit |
SMARTi | View protein in SMART SM00931, NOSIC, 1 hit |
SUPFAMi | SSF89124, SSF89124, 1 hit |
PROSITEi | View protein in PROSITE PS51358, NOP, 1 hit |
i Sequence
Sequence statusi: Complete.
O04656-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MLVLFETSGG FALFKVLDEG KLSNVEDLGT EFYSAESARR MGLHKFLKNN
60 70 80 90 100
CDDGEILAVA DPKLGDIITE KLDIECVHND AVMELLRGVR SQLTELLSGL
110 120 130 140 150
DDNDLAPVSL ELSHILARYK LKITSDKVET MIILSISLLD DLDKELNTYT
160 170 180 190 200
TSVCELYGLH FPELANIVQD NILYAKVVKL MGNRINAATL DFSEILADEV
210 220 230 240 250
EAELKEASMV STRTEVSDLD LMHIQELCDQ VLSIAEDKTL LCDDLKNKMN
260 270 280 290 300
KIAPNLTALV GELVGARLIS HCGSLWNLSK LPWSTIQILG AEKTLYKALK
310 320 330 340 350
TKQATPKYGL IYHAPLVRQA APENKGKIAR SLAAKSALAI RCDAFGNGQD
360 370 380 390 400
NTMGVESRLK LEARLRNLEG GDLGACEEEE EVNDKDTKKE ADDEEEPKTE
410 420 430 440 450
ECSKKRKKEA ELETVEDPAK KSKQEGVTGL LLLMLLISLI YFFSVNQLLW
Sequence cautioni
The sequence AAB61074 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AED93654 differs from that shown. Reason: Erroneous gene model prediction.Curated
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AF007271 Genomic DNA Translation: AAB61074.1 Sequence problems. CP002688 Genomic DNA Translation: AED93654.1 Sequence problems. CP002688 Genomic DNA Translation: ANM68536.1 |
PIRi | T01805 |
RefSeqi | NP_001330282.1, NM_001343993.1 NP_198066.1, NM_122596.1 |
Genome annotation databases
EnsemblPlantsi | AT5G27140.2; AT5G27140.2; AT5G27140 |
GeneIDi | 832772 |
Gramenei | AT5G27140.2; AT5G27140.2; AT5G27140 |
KEGGi | ath:AT5G27140 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AF007271 Genomic DNA Translation: AAB61074.1 Sequence problems. CP002688 Genomic DNA Translation: AED93654.1 Sequence problems. CP002688 Genomic DNA Translation: ANM68536.1 |
PIRi | T01805 |
RefSeqi | NP_001330282.1, NM_001343993.1 NP_198066.1, NM_122596.1 |
3D structure databases
SMRi | O04656 |
ModBasei | Search... |
Protein-protein interaction databases
BioGRIDi | 18046, 37 interactors |
STRINGi | 3702.AT5G27140.1 |
Proteomic databases
PaxDbi | O04656 |
PRIDEi | O04656 |
ProteomicsDBi | 251070 |
Genome annotation databases
EnsemblPlantsi | AT5G27140.2; AT5G27140.2; AT5G27140 |
GeneIDi | 832772 |
Gramenei | AT5G27140.2; AT5G27140.2; AT5G27140 |
KEGGi | ath:AT5G27140 |
Organism-specific databases
Araporti | AT5G27140 |
Phylogenomic databases
eggNOGi | KOG2572, Eukaryota |
HOGENOMi | CLU_015495_5_2_1 |
InParanoidi | O04656 |
OrthoDBi | 632707at2759 |
PhylomeDBi | O04656 |
Miscellaneous databases
PROi | PR:O04656 |
Gene expression databases
ExpressionAtlasi | O04656, baseline and differential |
Genevisiblei | O04656, AT |
Family and domain databases
Gene3Di | 1.10.246.90, 1 hit |
InterProi | View protein in InterPro IPR045056, Nop56/Nop58 IPR012974, NOP5_N IPR042239, Nop_C IPR002687, Nop_dom IPR036070, Nop_dom_sf IPR012976, NOSIC |
PANTHERi | PTHR10894, PTHR10894, 2 hits |
Pfami | View protein in Pfam PF01798, Nop, 1 hit PF08156, NOP5NT, 1 hit |
SMARTi | View protein in SMART SM00931, NOSIC, 1 hit |
SUPFAMi | SSF89124, SSF89124, 1 hit |
PROSITEi | View protein in PROSITE PS51358, NOP, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | NOP5C_ARATH | |
Accessioni | O04656Primary (citable) accession number: O04656 Secondary accession number(s): F4K2U4 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | November 1, 1997 |
Last sequence update: | May 15, 2007 | |
Last modified: | February 23, 2022 | |
This is version 128 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Arabidopsis thaliana
Arabidopsis thaliana: entries and gene names - SIMILARITY comments
Index of protein domains and families