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Protein

Transcription factor MYB25

Gene

MYB25

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Required for male gametophyte (pollen) development.1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi73 – 96H-T-H motifPROSITE-ProRule annotationAdd BLAST24
DNA bindingi124 – 147H-T-H motifPROSITE-ProRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

  • cell differentiation Source: GO_Central
  • pollen development Source: TAIR
  • regulation of transcription, DNA-templated Source: TAIR
  • regulation of transcription by RNA polymerase II Source: GO_Central
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription factor MYB251 Publication
Alternative name(s):
Myb-related protein 251 Publication
Short name:
AtMYB251 Publication
Gene namesi
Name:MYB251 Publication
Ordered Locus Names:At2g39880Imported
ORF Names:T28M21.4Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G39880
TAIRilocus:2061242 AT2G39880

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Disruption phenotypei

Abnormal male gametophyte (pollen) development including deformed cell wall, two-celled phenotype (one regular vegetative nucleus and one sperm cell-like nucleus, both in center) and semtimes leading to abortion.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004388111 – 367Transcription factor MYB25Add BLAST367

Proteomic databases

PaxDbiO04192

Expressioni

Inductioni

May be the target of the microRNA (miRNA) MIR393a.1 Publication

Gene expression databases

ExpressionAtlasiO04192 baseline and differential

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi3702.AT2G39880.1

Structurei

3D structure databases

ProteinModelPortaliO04192
SMRiO04192
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini45 – 100HTH myb-type 1PROSITE-ProRule annotationAdd BLAST56
Domaini101 – 151HTH myb-type 2PROSITE-ProRule annotationAdd BLAST51

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG0048 Eukaryota
COG5147 LUCA
HOGENOMiHOG000238469
InParanoidiO04192
KOiK09422
OMAiIMSAHAV
OrthoDBiEOG09360F17
PhylomeDBiO04192

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 2 hits

Sequencei

Sequence statusi: Complete.

O04192-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNGEISRPPE LISSRNPCKS FENAIHKAVE AELAELAKSD ANGGGKSKVK
60 70 80 90 100
GPWLPEQDEA LTRLVKMCGP RNWNLISRGI PGRSGKSCRL RWCNQLDPIL
110 120 130 140 150
KRKPFSDEEE HMIMSAQAVL GNKWSVIAKL LPGRTDNAIK NHWNSNLRRK
160 170 180 190 200
PAEQWKIPLL MSNTEIVYQL YPSMVRRISN ASPKEHLPQE EETGVLSDDK
210 220 230 240 250
MDDEAKEPPR EQNSKTGVYR PVARMGAFSV CKPGYMAPCE GPLVQASRPD
260 270 280 290 300
SLAGKFLQSL CYDPIIPSKC GHGCCNHQDS TTLSSSSVLG SEFVDYEEHS
310 320 330 340 350
SAELDKELIS ISNDLNNTAW IRSGKEAEQS LKADDQFRRE YAHSKFSGMV
360
NNGVSSQMVR QDLRALS
Length:367
Mass (Da):40,912
Last modified:July 1, 1997 - v1
Checksum:i9365BA5780EF7C7B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF175988 mRNA Translation: AAD53093.1
AB493582 mRNA Translation: BAH30420.1
AC003000 Genomic DNA Translation: AAM14852.1
AF002109 Genomic DNA Translation: AAB95273.1
CP002685 Genomic DNA Translation: AEC09744.1
PIRiT01017
RefSeqiNP_181517.1, NM_129546.2
UniGeneiAt.11575

Genome annotation databases

EnsemblPlantsiAT2G39880.1; AT2G39880.1; AT2G39880
GeneIDi818575
GrameneiAT2G39880.1; AT2G39880.1; AT2G39880
KEGGiath:AT2G39880

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF175988 mRNA Translation: AAD53093.1
AB493582 mRNA Translation: BAH30420.1
AC003000 Genomic DNA Translation: AAM14852.1
AF002109 Genomic DNA Translation: AAB95273.1
CP002685 Genomic DNA Translation: AEC09744.1
PIRiT01017
RefSeqiNP_181517.1, NM_129546.2
UniGeneiAt.11575

3D structure databases

ProteinModelPortaliO04192
SMRiO04192
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G39880.1

Proteomic databases

PaxDbiO04192

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G39880.1; AT2G39880.1; AT2G39880
GeneIDi818575
GrameneiAT2G39880.1; AT2G39880.1; AT2G39880
KEGGiath:AT2G39880

Organism-specific databases

AraportiAT2G39880
TAIRilocus:2061242 AT2G39880

Phylogenomic databases

eggNOGiKOG0048 Eukaryota
COG5147 LUCA
HOGENOMiHOG000238469
InParanoidiO04192
KOiK09422
OMAiIMSAHAV
OrthoDBiEOG09360F17
PhylomeDBiO04192

Miscellaneous databases

PROiPR:O04192

Gene expression databases

ExpressionAtlasiO04192 baseline and differential

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiMYB25_ARATH
AccessioniPrimary (citable) accession number: O04192
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 18, 2017
Last sequence update: July 1, 1997
Last modified: October 10, 2018
This is version 155 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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