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Protein
Submitted name:

Ribosomal Protein, Small subunit

Gene

rps-10

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • determination of adult lifespan Source: WormBase
  • ribosomal small subunit assembly Source: GO_Central

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinImported

Enzyme and pathway databases

ReactomeiR-CEL-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-CEL-1799339 SRP-dependent cotranslational protein targeting to membrane
R-CEL-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-CEL-72689 Formation of a pool of free 40S subunits
R-CEL-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-CEL-72702 Ribosomal scanning and start codon recognition
R-CEL-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-CEL-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-CEL-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Submitted name:
Ribosomal Protein, Small subunitImported
Gene namesi
Name:rps-10Imported
ORF Names:CELE_D1007.6Imported, D1007.6Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiD1007.6 ; CE09041 ; WBGene00004479 ; rps-10

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

EPDiO01869
PaxDbiO01869
PeptideAtlasiO01869
PRIDEiO01869

Expressioni

Gene expression databases

BgeeiWBGene00004479

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
pah-1P909253EBI-314419,EBI-318020

Protein-protein interaction databases

DIPiDIP-25833N
IntActiO01869, 33 interactors
STRINGi6239.D1007.6.2

Structurei

3D structure databases

ProteinModelPortaliO01869
SMRiO01869
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 95S10_plectinInterPro annotationAdd BLAST93

Phylogenomic databases

eggNOGiKOG3344 Eukaryota
COG5045 LUCA
GeneTreeiENSGT00440000034918
HOGENOMiHOG000216624
InParanoidiO01869
KOiK02947
OMAiDGCIVCH
OrthoDBiEOG091G0QTW
PhylomeDBiO01869

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR037447 Rps10
IPR005326 S10_plectin_N
IPR036388 WH-like_DNA-bd_sf
PANTHERiPTHR12146 PTHR12146, 1 hit
PfamiView protein in Pfam
PF03501 S10_plectin, 1 hit

Sequencei

Sequence statusi: Complete.

O01869-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFIPKSHTKL IYEYLFNEGV TVAKKDFNAK THPNIEGVSN LEVIKTLKSL
60 70 80 90 100
ASRELVKEQF AWRHYYWYLT DAGILYLREY LALPAEIVPA TIKTKPREIR
110 120 130 140
VPHEDRAPRA AQGEKGDREA YRTEKVTEAG PGGAPVYRAG FGRGAPPPQ
Length:149
Mass (Da):16,870
Last modified:July 1, 1997 - v1
Checksum:iD7F37F1D5E6C3935
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA Translation: CCD67317.1
PIRiT30925
RefSeqiNP_491398.1, NM_058997.4
UniGeneiCel.9108

Genome annotation databases

EnsemblMetazoaiD1007.6; D1007.6; WBGene00004479
GeneIDi172061
KEGGicel:CELE_D1007.6
UCSCiD1007.6.2 c. elegans

Similar proteinsi

Entry informationi

Entry nameiO01869_CAEEL
AccessioniPrimary (citable) accession number: O01869
Entry historyiIntegrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: July 1, 1997
Last modified: July 18, 2018
This is version 126 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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