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Protein

Fatty acid-binding protein homolog 6

Gene

lbp-6

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei110Fatty acidBy similarity1

GO - Molecular functioni

Keywordsi

Biological processTransport
LigandLipid-binding

Enzyme and pathway databases

ReactomeiR-CEL-163560 Triglyceride catabolism
R-CEL-2453902 The canonical retinoid cycle in rods (twilight vision)
R-CEL-5362517 Signaling by Retinoic Acid
R-CEL-5365859 RA biosynthesis pathway
R-CEL-6798695 Neutrophil degranulation
R-CEL-975634 Retinoid metabolism and transport

Names & Taxonomyi

Protein namesi
Recommended name:
Fatty acid-binding protein homolog 6
Gene namesi
Name:lbp-6
ORF Names:W02D3.5
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiW02D3.5 ; CE14426 ; WBGene00002258 ; lbp-6

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000674241 – 135Fatty acid-binding protein homolog 6Add BLAST135

Proteomic databases

EPDiO01812
PaxDbiO01812
PeptideAtlasiO01812
PRIDEiO01812

2D gel databases

World-2DPAGEi0020:O01812

Expressioni

Gene expression databases

BgeeiWBGene00002258

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
lap-1P346292EBI-327961,EBI-332157

Protein-protein interaction databases

BioGridi37838, 3 interactors
DIPiDIP-27012N
IntActiO01812, 2 interactors
STRINGi6239.W02D3.5.2

Structurei

3D structure databases

ProteinModelPortaliO01812
SMRiO01812
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni130 – 132Fatty acid bindingBy similarity3

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG4015 Eukaryota
ENOG4111US8 LUCA
GeneTreeiENSGT00760000118898
HOGENOMiHOG000004829
InParanoidiO01812
KOiK08752
OMAiATRKMAG
OrthoDBiEOG091G0QSV
PhylomeDBiO01812

Family and domain databases

Gene3Di2.40.128.20, 1 hit
InterProiView protein in InterPro
IPR012674 Calycin
IPR000463 Fatty_acid-bd
IPR031259 ILBP
IPR000566 Lipocln_cytosolic_FA-bd_dom
PANTHERiPTHR11955 PTHR11955, 1 hit
PfamiView protein in Pfam
PF00061 Lipocalin, 1 hit
PRINTSiPR00178 FATTYACIDBP
SUPFAMiSSF50814 SSF50814, 1 hit
PROSITEiView protein in PROSITE
PS00214 FABP, 1 hit

Sequencei

Sequence statusi: Complete.

O01812-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQEFVGRWK LIHSENFEEY MKEVGVGLIT RKAAANLKPT LEIKVEGDLW
60 70 80 90 100
YSNQYSTFKN TTLSFKLGQE FDETTPDGRT VKSVVNFENG KFIHIQKKIK
110 120 130
DSDKESIITR WLEGDKLITT LESGSVVSRR EYVRE
Length:135
Mass (Da):15,641
Last modified:July 1, 1997 - v1
Checksum:iD84E71652EBE83C0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081084 Genomic DNA Translation: CCD68988.1
PIRiT15205
RefSeqiNP_491926.1, NM_059525.4
UniGeneiCel.30369

Genome annotation databases

EnsemblMetazoaiW02D3.5; W02D3.5; WBGene00002258
GeneIDi172390
KEGGicel:CELE_W02D3.5
UCSCiW02D3.5.3 c. elegans

Similar proteinsi

Entry informationi

Entry nameiFABP6_CAEEL
AccessioniPrimary (citable) accession number: O01812
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 10, 2004
Last sequence update: July 1, 1997
Last modified: May 23, 2018
This is version 114 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. SIMILARITY comments
    Index of protein domains and families

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