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Protein
Submitted name:

RiNg Finger protein

Gene

rnf-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
RiNg Finger proteinImported
Gene namesi
Name:rnf-1Imported
ORF Names:C06A5.9Imported, CELE_C06A5.9Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiC06A5.9 ; CE34249 ; WBGene00004380 ; rnf-1

PTM / Processingi

Proteomic databases

PaxDbiO01482

Expressioni

Gene expression databases

BgeeiWBGene00004380 Expressed in 5 organ(s), highest expression level in material anatomical entity

Interactioni

Binary interactionsi

Protein-protein interaction databases

DIPiDIP-24323N
IntActiO01482, 49 interactors
STRINGi6239.C06A5.9

Structurei

3D structure databases

ProteinModelPortaliO01482
SMRiO01482
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini22 – 68RING-typeInterPro annotationAdd BLAST47

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili149 – 169Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis, Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG2177 Eukaryota
ENOG4111G04 LUCA
GeneTreeiENSGT00600000085185
InParanoidiO01482
OrthoDBiEOG091G0MLR

Family and domain databases

Gene3Di3.30.40.10, 1 hit
InterProiView protein in InterPro
IPR027370 Znf-RING_LisH
IPR001841 Znf_RING
IPR013083 Znf_RING/FYVE/PHD
IPR017907 Znf_RING_CS
PfamiView protein in Pfam
PF13445 zf-RING_UBOX, 1 hit
SMARTiView protein in SMART
SM00184 RING, 1 hit
PROSITEiView protein in PROSITE
PS00518 ZF_RING_1, 1 hit
PS50089 ZF_RING_2, 1 hit

Sequencei

Sequence statusi: Complete.

O01482-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSEKNTENPE ILSTVLAGYC QCQVCYQPFN ETTKLARSLH CGHTFCTECI
60 70 80 90 100
RNVQNYGNSP HLECPTCRAE TKSNIENVAP NFSIMELARN FGLLGPPVDA
110 120 130 140 150
PRTSSSCCSN KTNRDEMIDN KFRELLVEVK SSLIHHFDVF RIKSQLWSLA
160 170 180 190 200
EAEREVSNMA EALAGAVSEC YYDSDDNSDA NSEDQRVRTM LRFLAARDSD
210 220 230 240 250
SETTEDSTDF LESNTTVPDR TLGGGFYRNF RRLFGDENEL DDPGVVSGIE
260 270 280 290 300
EAAAYRRFRG LFGNDNDSIS QVSTTSGSFG NHENDHFCPF SDDDNISECS
310 320 330 340 350
DDYYPTLVMP ETDEEETYKS FRCLFGDENG NLDFSDDEKE FSDNESSLSS
360 370 380
VSTEDFPNSH IEEAGRVLHR FLLLSALLNE E
Length:381
Mass (Da):42,871
Last modified:October 1, 2003 - v2
Checksum:i75B02D6A9340CD8E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA Translation: CCD61221.1
PIRiT25524
RefSeqiNP_491738.2, NM_059337.4
UniGeneiCel.19257

Genome annotation databases

EnsemblMetazoaiC06A5.9; C06A5.9; WBGene00004380
GeneIDi172277
KEGGicel:CELE_C06A5.9
UCSCiC06A5.9 c. elegans

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA Translation: CCD61221.1
PIRiT25524
RefSeqiNP_491738.2, NM_059337.4
UniGeneiCel.19257

3D structure databases

ProteinModelPortaliO01482
SMRiO01482
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-24323N
IntActiO01482, 49 interactors
STRINGi6239.C06A5.9

Proteomic databases

PaxDbiO01482

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC06A5.9; C06A5.9; WBGene00004380
GeneIDi172277
KEGGicel:CELE_C06A5.9
UCSCiC06A5.9 c. elegans

Organism-specific databases

CTDi172277
WormBaseiC06A5.9 ; CE34249 ; WBGene00004380 ; rnf-1

Phylogenomic databases

eggNOGiKOG2177 Eukaryota
ENOG4111G04 LUCA
GeneTreeiENSGT00600000085185
InParanoidiO01482
OrthoDBiEOG091G0MLR

Gene expression databases

BgeeiWBGene00004380 Expressed in 5 organ(s), highest expression level in material anatomical entity

Family and domain databases

Gene3Di3.30.40.10, 1 hit
InterProiView protein in InterPro
IPR027370 Znf-RING_LisH
IPR001841 Znf_RING
IPR013083 Znf_RING/FYVE/PHD
IPR017907 Znf_RING_CS
PfamiView protein in Pfam
PF13445 zf-RING_UBOX, 1 hit
SMARTiView protein in SMART
SM00184 RING, 1 hit
PROSITEiView protein in PROSITE
PS00518 ZF_RING_1, 1 hit
PS50089 ZF_RING_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiO01482_CAEEL
AccessioniPrimary (citable) accession number: O01482
Entry historyiIntegrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: October 1, 2003
Last modified: September 12, 2018
This is version 134 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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