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UniProtKB - N8S3X6 (N8S3X6_9GAMM)

Entry version 34 (19 Jan 2022)
Sequence version 1 (26 Jun 2013)
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Protein
Submitted name:

Type VI secretion system tube protein Hcp

Gene

CVD06_00290

Organism
Acinetobacter seifertii
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Type VI secretion system tube protein HcpImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:CVD06_00290Imported, DBL04_13695Imported, E2R16_00285Imported, F985_03176Imported, IC763_12995Imported, IC772_11340Imported, IC776_07045Imported, IC779_07115Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiAcinetobacter seifertiiImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1530123 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Gammaproteobacteria › Moraxellales › Moraxellaceae › Acinetobacter › Acinetobacter calcoaceticus/baumannii complex
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000516672 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome
  • UP000516560 Componenti: Chromosome
  • UP000244172 Componenti: Unassembled WGS sequence
  • UP000516666 Componenti: Chromosome
  • UP000297445 Componenti: Unassembled WGS sequence
  • UP000516799 Componenti: Chromosome
  • UP000229898 Componenti: Unassembled WGS sequence
  • UP000013065 Componenti: Unassembled WGS sequence

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_112762_0_1_6

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.30.110.20, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR036624, Hcp1-lik_sf
IPR008514, T6SS_Hcp

Pfam protein domain database

More...Pfami		View protein in Pfam
PF05638, T6SS_HCP, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF141452, SSF141452, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR03344, VI_effect_Hcp1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

N8S3X6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKDIYVEFRG KYKVDGESRD SEHKGWLEVN SWSHNIRQPK SATSSSVGGH 
        60         70         80         90        100
TAERVEHSDM VFVKDLDATS PKLWEACSAG YTFDEVQIDF YRANGDKRIK 
       110        120        130        140        150
YLQIKLKHVL VSSVTPTVNE EGVPTEAFGL KYAAVEWTYN QQDINGTAKG 
       160 
AVTKKWSLSN NTASYAA
Length:167
Mass (Da):18,743
Last modified:June 26, 2013 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i55A6EDE244BA9E97
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
APOO01000022 Genomic DNA Translation: ENU42288.1
PGPD01000004 Genomic DNA Translation: PJF05756.1
QAYP01000106 Genomic DNA Translation: PTV52874.1
CP061646 Genomic DNA Translation: QNX73601.1
CP061664 Genomic DNA Translation: QNX86245.1
CP061687 Genomic DNA Translation: QNY26400.1
CP061828 Genomic DNA Translation: QOD74473.1
SNSA01000001 Genomic DNA Translation: TEU29497.1

NCBI Reference Sequences

More...RefSeqi		WP_000653195.1, NZ_SNSA01000001.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		ENU42288; ENU42288; F985_03176
PJF05756; PJF05756; CVD06_00290
PTV52874; PTV52874; DBL04_13695

Database of genes from NCBI RefSeq genomes

More...GeneIDi		60876442
66397670

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|520709.3.peg.3117

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
APOO01000022 Genomic DNA Translation: ENU42288.1
PGPD01000004 Genomic DNA Translation: PJF05756.1
QAYP01000106 Genomic DNA Translation: PTV52874.1
CP061646 Genomic DNA Translation: QNX73601.1
CP061664 Genomic DNA Translation: QNX86245.1
CP061687 Genomic DNA Translation: QNY26400.1
CP061828 Genomic DNA Translation: QOD74473.1
SNSA01000001 Genomic DNA Translation: TEU29497.1
RefSeqiWP_000653195.1, NZ_SNSA01000001.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiENU42288; ENU42288; F985_03176
PJF05756; PJF05756; CVD06_00290
PTV52874; PTV52874; DBL04_13695
GeneIDi60876442
66397670
PATRICifig|520709.3.peg.3117

Phylogenomic databases

HOGENOMiCLU_112762_0_1_6

Family and domain databases

Gene3Di2.30.110.20, 1 hit
InterProiView protein in InterPro
IPR036624, Hcp1-lik_sf
IPR008514, T6SS_Hcp
PfamiView protein in Pfam
PF05638, T6SS_HCP, 1 hit
SUPFAMiSSF141452, SSF141452, 1 hit
TIGRFAMsiTIGR03344, VI_effect_Hcp1, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiN8S3X6_9GAMM
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: N8S3X6
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: June 26, 2013
Last sequence update: June 26, 2013
Last modified: January 19, 2022
This is version 34 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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