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Protein

Flagellar brake protein YcgR

Gene

ycgR

Organism
Thauera linaloolentis 47Lol = DSM 12138
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.UniRule annotation

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

GO - Molecular functioni

GO - Biological processi

Keywordsi

Ligandc-di-GMPUniRule annotation, Nucleotide-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Flagellar brake protein YcgRUniRule annotation
Alternative name(s):
Cyclic di-GMP binding protein YcgRUniRule annotation
Gene namesi
Name:ycgRUniRule annotation
ORF Names:C666_09750Imported
OrganismiThauera linaloolentis 47Lol = DSM 12138Imported
Taxonomic identifieri1123367 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaRhodocyclalesZoogloeaceaeThauera
Proteomesi
  • UP000013232 Componenti: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Bacterial flagellumUniRule annotation

Interactioni

Subunit structurei

Monomer. Interacts with the flagellar basal bodies.UniRule annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini21 – 127T3SS_YcgR_NInterPro annotationAdd BLAST107
Domaini129 – 241PilZInterPro annotationAdd BLAST113

Sequence similaritiesi

Belongs to the YcgR family.UniRule annotation

Phylogenomic databases

OrthoDBiPOG091H0NAE

Family and domain databases

Gene3Di2.30.110.10, 1 hit
HAMAPiMF_01457 YcgR, 1 hit
InterProiView protein in InterPro
IPR009875 PilZ_domain
IPR012349 Split_barrel_FMN-bd
IPR023787 T3SS_YcgR
IPR009926 T3SS_YcgR_N
PfamiView protein in Pfam
PF07238 PilZ, 1 hit
PF07317 YcgR, 1 hit

Sequencei

Sequence statusi: Complete.

N6Z028-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTIEHELTRV ELLQADDASK YLLKDDREIL FIMRRLVDAR SLLSARGEPG
60 70 80 90 100
YDSFLTALLQ ISSDGSTLIL DGSPDAALNA RLEQAERLDC VTQLDKVRIQ
110 120 130 140 150
FMLDRPVFQT WREGPAFSAA LPGELLRLQR REFYRLQAPV THSLTCTVPL
160 170 180 190 200
PHAGELALRI IDISGGGIAI AVPPADAPFA PGDEFAGCRI TLPDSPPISA
210 220 230 240 250
RLIVRNLFRL TTRNGVEMLR AGCEFSDMPR GADEAIQRYI LRIERERNAR

QHTLG
Length:255
Mass (Da):28,432
Last modified:June 26, 2013 - v1
Checksum:i47BCBC286950AF63
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AMXE01000031 Genomic DNA Translation: ENO87962.1
RefSeqiWP_004337802.1, NZ_KK211256.1

Genome annotation databases

EnsemblBacteriaiENO87962; ENO87962; C666_09750

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AMXE01000031 Genomic DNA Translation: ENO87962.1
RefSeqiWP_004337802.1, NZ_KK211256.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiENO87962; ENO87962; C666_09750

Phylogenomic databases

OrthoDBiPOG091H0NAE

Family and domain databases

Gene3Di2.30.110.10, 1 hit
HAMAPiMF_01457 YcgR, 1 hit
InterProiView protein in InterPro
IPR009875 PilZ_domain
IPR012349 Split_barrel_FMN-bd
IPR023787 T3SS_YcgR
IPR009926 T3SS_YcgR_N
PfamiView protein in Pfam
PF07238 PilZ, 1 hit
PF07317 YcgR, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiN6Z028_9RHOO
AccessioniPrimary (citable) accession number: N6Z028
Entry historyiIntegrated into UniProtKB/TrEMBL: June 26, 2013
Last sequence update: June 26, 2013
Last modified: September 27, 2017
This is version 21 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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