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Entry version 27 (07 Apr 2021)
Sequence version 1 (26 Jun 2013)
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Protein

LPD22 domain-containing protein

Gene

J057_01640

Organism
Marinobacter nanhaiticus D15-8W
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
LPD22 domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:J057_01640Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMarinobacter nanhaiticus D15-8WImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri626887 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeMarinobacter
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000013165 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
626887.J057_01640

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini44 – 138LPD22InterPro annotationAdd BLAST95

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 33DisorderedSequence analysisAdd BLAST33

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili699 – 726Sequence analysisAdd BLAST28

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG502ZABJ, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_233072_0_0_6

Database of Orthologous Groups

More...
OrthoDBi
142817at2

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR040738, LPD22

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF18834, LPD22, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

N6X718-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNKYTEAVSQ LTGTQSQEQQ TPAPENKYSK AVSSLAEQRR SVLARSVNQA
60 70 80 90 100
VTEQPDDLAY IRRLSEDTGL SPYIVRENRD DIERRVKQRE MGAQIEGFSQ
110 120 130 140 150
PGKEWLSRPD NLGVAQDDLP ALRALDDAIA NRDWYAQDSV DKLIGSVKTG
160 170 180 190 200
AINVRQAGSS VAATPALNRI AEFDRLDSLL NEGGREQALG YIRENDRALA
210 220 230 240 250
GTALKADMLR YIGADDVERA DLRAMAQEQI SAAGTEIAVQ ETQRQDIPQD
260 270 280 290 300
PLQMQAARDG TVGGVLSAIA KDPGMIARLT TESIVTSLPT LAAGALTGPL
310 320 330 340 350
GAAGASFSTE RGLGLVSALR ESGIDTTNPD AIIQALTDPA FLEDAQRRSE
360 370 380 390 400
MKALGVSMLD LVGAGIASRS LSPSSVAGRT LSARQRELIN IFAQMPVQGV
410 420 430 440 450
QEAAGEATGQ FLADGEVNQA EVALEAIGGF FGATADVVAF SGGRVFDGIV
460 470 480 490 500
NNANNYRRAK RDREYLTAVK DAANQSKLRQ RDPKAMKELL DRLSESGPVN
510 520 530 540 550
EMYISGKDFQ ELFQSNNMDP AEYAQKMESV GEQYYESLVT GGDIAVSVSD
560 570 580 590 600
FASVIAPTEV ADAFIQRSRT KTDGMSPAEA DQWIQEQARP ALDAIINYDG
610 620 630 640 650
DQAGAGAQRV YDNVTEQLMA TGMDRGAAER HASLYRAFFG VMGEVEGVDP
660 670 680 690 700
FDLYQQYSLS ITRERPGVLQ SDDLAALDPL LNRIREGDIP GPDTEDANLR
710 720 730 740 750
QTAADIASLQ AELDRLGIDL QSTDNATARA ELGRVVYGTG ETNADTVLSQ
760 770 780 790 800
DEMQVDEVTD SEEIRRILDQ YQRRQSPEQQ VTFRTVGGRE VDQSWREATS
810 820 830 840 850
FRGNDGQPAP LYRGSSRQLT GSDFQPESLG FATQNPSAAL GVWFTSDRSD
860 870 880 890 900
AGRYGNVSEY YADIRNPRVY SSDSIPEFNS AEDAAALREQ LKSEGYDGIV
910 920 930 940 950
FDYTDVDGPI HAIAFEPDQV ITGATESFNQ DVGGKRGVIR IDRANRNFNI
960 970 980 990 1000
ELLANADLST FLHESGHFFL EVLGDLAQAE GASQRVQGQY QALLDWFGVE
1010 1020 1030 1040 1050
SREQIGTEQH EQFARGFEAY LMEGKAPTPE LQSVFARFRA WLLAIYKRLR
1060 1070 1080 1090 1100
ALDVDLTDEV RNVMDRILAT DEDIERAREG ASMTDTLGDI AAMEWTEQER
1110 1120 1130 1140 1150
AQYRDVVADA KEAATAELTT RQMKDLRKTN EKWYKDELER VRDEVRQSLN
1160 1170 1180 1190 1200
NDPTYQVLAH LQHGKQPDGT SLPDSLNAVK LSRGILVAQY GEAFLKQLPG
1210 1220 1230 1240 1250
PGNKQHSGPY LYSREGGIDP QVMADIYGFS SGDELVQTLV ASRPMREVVE
1260 1270 1280 1290 1300
ERATQIMRER YPDINLTGEA AEAAIAAVHN DKAAERMLLE LKKLHGKSRF
1310 1320 1330 1340 1350
SRNPMTPARV MREAAVRLVN GQRVNDIRPD LYRRAESRAA REAFEAATNS
1360 1370 1380 1390 1400
DFDVAFDAKQ RQLLNHYLYR EAVKARDESE SILEYVRRFD KKATRQRIGK
1410 1420 1430 1440 1450
AGGEYLEQID ALIDQYEFRR VSLRQIQRRR SLEAWAQEQS ENGLDPAIPE
1460 1470 1480 1490 1500
SVMRQAERVN YKEVPFEELV GIRDAIQSIE HLARTKNKLL SSQYKREFAE
1510 1520 1530 1540 1550
TVDDIVSSIE ASHEIKREPP QFVRGKLSQL KDWGDQYVAA HAKPEFIFEY
1560 1570 1580 1590 1600
LDGNKSMGPV WQALFKPMAD AENAENRMTG ETMEKLTEIM KPFKEEQRAH
1610 1620 1630 1640 1650
WFTQKQYLPE VGVSMTKSNM IALALNWGNE GNREAVRRGY DWTDEQVMSV
1660 1670 1680 1690 1700
LNRLSQDEWQ MVQSIWDLVD SFWPQIAQLQ KDLVGVAPEK VESAPIQTRH
1710 1720 1730 1740 1750
GTFKGGYYPL KYDPRRSFLQ FRRDEGVNTQ DLFENNFLRP ATKKGHTVER
1760 1770 1780 1790 1800
VGSAGQSVRL DMAVLGEHIY QVIHDLTHRK AIIDVDRLLG NVRVRHAIEG
1810 1820 1830 1840 1850
SAGREAYRQL RPWLQAIAND TKLPTLPWER VISHMRAGGT IVNMGWKFTT
1860 1870 1880 1890 1900
AIVQPLGYLQ SVDQIGAKYA WKGLRDFFGS PTKMKKQVDF VFERSEAMKN
1910 1920 1930 1940 1950
RQRTFDRDVR DYARKLEREG KMDQVRQSFF WMTGMLDMSV SVPTWLGAYR
1960 1970 1980 1990 2000
KAMEGGVENI AKGDEAGAID YADQAVRESQ SSGAVKDLAR IQRGNEAFRA
2010 2020 2030 2040 2050
FTMFYSYFSA LFNLLRRRRQ DLSLGNINVP QFAASMALLW LAPAILGELV
2060 2070 2080 2090 2100
AGRGPNDDEE WAQWAARQGM LYPLSTMIGL RDVANAVLTP YGFNASPAYD
2110 2120 2130 2140 2150
GLDQTARALQ IPYKAMTGEE LKRTDVKSAV LATSYWGHLP GRQAWITGEY
2160 2170 2180
LFDLMEGNER PENPAEFAKG IMFSRPADER
Length:2,180
Mass (Da):243,558
Last modified:June 26, 2013 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i48404B0DA860848D
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
APLQ01000008 Genomic DNA Translation: ENO16933.1

NCBI Reference Sequences

More...
RefSeqi
WP_004582873.1, NZ_KB822695.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ENO16933; ENO16933; J057_01640

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|626887.3.peg.308

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
APLQ01000008 Genomic DNA Translation: ENO16933.1
RefSeqiWP_004582873.1, NZ_KB822695.1

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi626887.J057_01640

Genome annotation databases

EnsemblBacteriaiENO16933; ENO16933; J057_01640
PATRICifig|626887.3.peg.308

Phylogenomic databases

eggNOGiENOG502ZABJ, Bacteria
HOGENOMiCLU_233072_0_0_6
OrthoDBi142817at2

Family and domain databases

InterProiView protein in InterPro
IPR040738, LPD22
PfamiView protein in Pfam
PF18834, LPD22, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiN6X718_9ALTE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: N6X718
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: June 26, 2013
Last sequence update: June 26, 2013
Last modified: April 7, 2021
This is version 27 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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