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Protein

DNA polymerase

Gene
N/A
Organism
Brassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1).UniRule annotation

Cofactori

[4Fe-4S] clusterUniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotation, DNA-directed DNA polymeraseUniRule annotation, Nucleotidyltransferase, Transferase
Biological processDNA replicationUniRule annotation
Ligand4Fe-4SUniRule annotation, Iron, Iron-sulfur, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
DNA polymeraseUniRule annotation (EC:2.7.7.7UniRule annotation)
OrganismiBrassica rapa subsp. pekinensis (Chinese cabbage) (Brassica pekinensis)Imported
Taxonomic identifieri51351 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeBrassiceaeBrassica
Proteomesi
  • UP000011750 Componenti: Chromosome A02

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi3711.Bra026562.1-P

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini212 – 579DNA_pol_B_exo1InterPro annotationAdd BLAST368
Domaini639 – 1095DNA_pol_BInterPro annotationAdd BLAST457
Domaini1133 – 1327zf-DNA_PolInterPro annotationAdd BLAST195

Sequence similaritiesi

Belongs to the DNA polymerase type-B family.UniRule annotation

Keywords - Domaini

Zinc-fingerUniRule annotation

Phylogenomic databases

InParanoidiM4ECQ2
OMAiKKEAICK
OrthoDBiEOG093600RC

Family and domain databases

Gene3Di1.10.3200.20, 1 hit
3.30.420.10, 1 hit
3.90.1600.10, 2 hits
InterProiView protein in InterPro
IPR006172 DNA-dir_DNA_pol_B
IPR017964 DNA-dir_DNA_pol_B_CS
IPR006133 DNA-dir_DNA_pol_B_exonuc
IPR006134 DNA-dir_DNA_pol_B_multi_dom
IPR023211 DNA_pol_palm_dom_sf
IPR038256 Pol_alpha_znc_sf
IPR012337 RNaseH-like_sf
IPR036397 RNaseH_sf
IPR015088 Znf_DNA-dir_DNA_pol_B_alpha
PfamiView protein in Pfam
PF00136 DNA_pol_B, 1 hit
PF03104 DNA_pol_B_exo1, 1 hit
PF08996 zf-DNA_Pol, 1 hit
PRINTSiPR00106 DNAPOLB
SMARTiView protein in SMART
SM00486 POLBc, 1 hit
SUPFAMiSSF53098 SSF53098, 3 hits
PROSITEiView protein in PROSITE
PS00116 DNA_POLYMERASE_B, 1 hit

Sequencei

Sequence statusi: Complete.

M4ECQ2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGDNSTEVE RKRGRAAEEA SSWKNSVERL KAIRQGGLGN LSASGGGYEL
60 70 80 90 100
EQPVDDEYDA IVKCEGILEE VLAKVNPDDM DRERHRRRKQ AATVPIKIRD
110 120 130 140 150
SDDKCDHVAM ENELMKEDVT DSVVTTLPQT CENMELPTSD SEGSNNIRQS
160 170 180 190 200
EEAKAESGVK KEAICKGGTE NGAEFDLDAD GSLRFYILDA YEEAFGASMG
210 220 230 240 250
TVYLFGKVKM GDTYKSCCVV VKNIQRCVYA IPNGSIFPSH ELFMLQQEVK
260 270 280 290 300
LSPESFRVKK LHEMASKLKN EISQQLLRLN VSNYSMALVK RSYAFEKPDV
310 320 330 340 350
PAGEQYVLKI NYPFKDPALP QDLKGDSFCA VLGSHTSALE LFILKRKIMG
360 370 380 390 400
PSWLKISNFS TSLPSQRVSW CKCEVTVESP KVITVLVPEE KVVHPPAVVT
410 420 430 440 450
AINLKTIVNE KHNISEIVSA SLLCFHNAKI DVPMAGPERK RCGILSHFTV
460 470 480 490 500
VRNPEGTCYP IGWKKEVADR NSKKGCSVLS FENSERALLN RLFLELNKLD
510 520 530 540 550
SDVLVGHNIS RFDLDACKVL SSMWSKIGRL KRSFMPKLKG NNKSGATPGL
560 570 580 590 600
MSCIAGRLLC DTDLCSQDLL KQQVSYSLTD LSKTQLNQDR KQISPHDIPK
610 620 630 640 650
MFQSSKTLVE LIECGERDAW LSMELMFHLS VLPLTLQLTN ISGNLWGKTL
660 670 680 690 700
QGSRAQRIEY YLLHTFHSRK YILPDKISQR MKDIIKSSKR RISHGELDAD
710 720 730 740 750
LALENDPSKK GPGYAGGLVL EPKKGLYDKY VVLLDFNSLY PSIIQEYNIC
760 770 780 790 800
FTTVPRSEDG VPRLPSSQTP GILPKLMEHL VSIRKRVKQK MKKETGLKYW
810 820 830 840 850
ELDIRQQALK LTANSMYGCL GFSDSRFYAK PLAELITLQG REILQRTVDL
860 870 880 890 900
VQNHLNLEVI YGDTDSIMIH SGLDDFEEVK TIITKVIQAV NKKYRCLKID
910 920 930 940 950
CDGIYKRMLI LRKKKYAGVK LQFKDGQTCE EIERKGVDMV RRDWSLLSKE
960 970 980 990 1000
IGDLCLAKIF YGGSCEDVVE AIHNELVKIK EEMRNGQVSL EKYVITKALT
1010 1020 1030 1040 1050
KAPEAYPDSK SQPHVQVALR MRQRGFKEGF NAKDTVPYII CYEQGNASSV
1060 1070 1080 1090 1100
SSAGIAKRAR HPDEVKSDDS RLLVDIDYYL AQQIHPVVSR LCAEIQGTSP
1110 1120 1130 1140 1150
ERLAECLGLD PSKYRSNDAT SSDPSTSLLF ATSHEERYKS CEPLTLTCPS
1160 1170 1180 1190 1200
CSASFNCPSI TSSVCASISN KSETEESTFW LRLHCSKCTG RISPAMIANQ
1210 1220 1230 1240 1250
VKRQIDGFLS MYYKGTMMCD DESCKHTTRS PNFRLLGDRE RGTVCPNYPN
1260 1270 1280 1290 1300
CNGTLLRKYT EADLYKQLSY FCHILDTQFS LEKMDVGVRI QVEKAMMKIK
1310 1320
PAVESAASIA RSIRDRCDYG WVQLTDIAI
Length:1,329
Mass (Da):149,431
Last modified:May 1, 2013 - v1
Checksum:i60EB4DE5DF316FED
GO

Genome annotation databases

EnsemblPlantsiBra026562.1; Bra026562.1-P; Bra026562
GrameneiBra026562.1; Bra026562.1-P; Bra026562

Similar proteinsi

Entry informationi

Entry nameiM4ECQ2_BRARP
AccessioniPrimary (citable) accession number: M4ECQ2
Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 2013
Last sequence update: May 1, 2013
Last modified: April 25, 2018
This is version 33 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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